Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F09_e550_11.seq
         (1578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as...    42   0.001
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as...    30   3.6  
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as...    30   3.6  
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    29   8.4  

>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative simialr to
           aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
           melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
           norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 532

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = +1

Query: 250 GADAILNXEALPDVQXDNRHIMIRGENTSKVLRARAAVTXAFREHFXSRRYTXVSXPTLX 429
           G D       L D + +NR + IR      + R +  V  AFRE+  S+ +  +  P L 
Sbjct: 196 GKDGKQAARVLQDTRLNNRVLDIRTPANQAIFRIQCQVQIAFREYLQSKGFLEIHTPKLI 255

Query: 430 QTQCEGGXTLFKX*Y 474
               EGG  +F+  Y
Sbjct: 256 AGSSEGGSAVFRLDY 270


>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +1

Query: 286 DVQXDNRHIMIRGENTSKVLRARAAVTXAFREHFXSRRYTXVSXPTLXQTQCEGGXTLFK 465
           D + + R + +R      + + +  V  AFRE    + +  +  P L     EGG  +F+
Sbjct: 234 DTRLNYRVLDLRTPANQAIFQLQYEVEYAFREKLRFKNFVGIHTPKLMAGSSEGGSAVFR 293

Query: 466 X*Y 474
             Y
Sbjct: 294 LEY 296


>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +1

Query: 286 DVQXDNRHIMIRGENTSKVLRARAAVTXAFREHFXSRRYTXVSXPTLXQTQCEGGXTLFK 465
           D + + R + +R      + + +  V  AFRE    + +  +  P L     EGG  +F+
Sbjct: 234 DTRLNYRVLDLRTPANQAIFQLQYEVEYAFREKLRFKNFVGIHTPKLMAGSSEGGSAVFR 293

Query: 466 X*Y 474
             Y
Sbjct: 294 LEY 296


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 29  GCPLFCRNSXRGRLLTVCRCMVSSVRHTML*CFRLNRQ 142
           GCP  C+N  RG     C C  S  R     CF  +R+
Sbjct: 679 GCPKSCKNRFRG-----CHCAKSQCRSRQCPCFAADRE 711


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,825
Number of Sequences: 28952
Number of extensions: 188523
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4250619072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)