Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F08_e542_12.seq
         (1593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603     31   1.9  
03_02_0286 + 7100342-7100504,7100613-7100719,7102109-7102240,710...    31   1.9  
05_05_0185 + 23064249-23064448,23064881-23064950,23065082-230651...    30   5.9  

>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
          Length = 1132

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +2

Query: 41  TSGXPPGCRXFGTRLRHIILCAEFNKIPR--CSSQYFLGVVXLIGLIKAAPVTENNDEKL 214
           ++G P  CR     +RH+ L A  NK+       +  L VV ++G+      T  N+   
Sbjct: 162 SAGHPTLCRKRADGVRHVGLDAAINKVQEWLADGEKKLKVVSIVGVGGVGKTTLANELYR 221

Query: 215 IVSSELFINEFVQYSSKYDIVSLTVPLNS 301
            +  +     FV+ S K D+  L + + S
Sbjct: 222 KLGRQFECQAFVRSSQKVDMRRLLISMLS 250


>03_02_0286 +
           7100342-7100504,7100613-7100719,7102109-7102240,
           7102383-7102539,7103099-7103220
          Length = 226

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 620 LYVLTENHDVYKVSDGGNKNEKLEDVKDAQEIVLDYSNNLYFY 748
           L  +T+  +V +    GN  E +E + D    +LD +  LYF+
Sbjct: 59  LATITDRMEVKRAVQSGNVQEAIEKINDLNPTILDTNPQLYFH 101


>05_05_0185 +
           23064249-23064448,23064881-23064950,23065082-23065120,
           23065639-23066067,23067322-23067627
          Length = 347

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
 Frame = +2

Query: 506 FSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYVLTENHDVYKVSDGGNKNEK 685
           FS     +   A   +    G++T S+   + T   D  + + +NHD   VS   +KN  
Sbjct: 34  FSVATDAHEVSAGERRERGGGSSTSSVSPPMHTRNHDTSHDIEQNHDTSHVSHDPSKNHD 93

Query: 686 LEDVK-DAQEIVLDYSNNLYFYGKDKAPYVVTEDGVKKILGLPENSTYV 829
              V  D  +I+   +  L  + K+       E    K  G+  +S  V
Sbjct: 94  TSHVSYDPPKIISLQNTILRMFHKEAEEPADDEGAAGKKQGMARDSDEV 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,549,189
Number of Sequences: 37544
Number of extensions: 643784
Number of successful extensions: 1240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5162938060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)