Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F08_e542_12.seq
         (1593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        37   0.039
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   36   0.12 
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.5  
SB_3800| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.8  

>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 37.1 bits (82), Expect = 0.039
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
 Frame = +2

Query: 431  NGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVK 601
            N  A +++++ +DA     +N D   V  S  D I V D+ +++     +N+D  I ++ 
Sbjct: 1197 NSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSDEIRAMDSNSDE-IRVMD 1255

Query: 602  TNGSDVLYVLTENHDVYKVSDGGNKNEKLED 694
            +N SD + V+  N D  +V D  +   ++ D
Sbjct: 1256 SN-SDAIRVMDSNSDAIRVMDSYSDEIRVMD 1285



 Score = 34.7 bits (76), Expect = 0.21
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
 Frame = +2

Query: 368  FVEADVNDKGEKEYKGLYSLKNGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFD 538
            FV          E + +YS  N    + + + +DA     +N D   V  S  D I V D
Sbjct: 1128 FVTKATKVSNSNEIREMYS--NSDEMREMYSNSDAIRVMDSNSDAIRVMDSNSDAIRVMD 1185

Query: 539  AKTNKTEKYGTNTDSLIGIVKTNGSDVLYVLTENHDVYKVSDGGNKNEKLEDVKDAQEIV 718
            + +++     +N+D+ I ++ +N SD + V+  N D  +V D  +   ++ D  ++ EI 
Sbjct: 1186 SNSDEIRVMDSNSDA-IRVMDSN-SDAIRVMDSNSDAIRVMDSNSDAIRVMD-SNSDEIR 1242

Query: 719  LDYSNN 736
               SN+
Sbjct: 1243 AMDSNS 1248


>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 27/94 (28%), Positives = 39/94 (41%)
 Frame = +2

Query: 443 TKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVL 622
           TK   T  D  A+NDD ++ Y S  D    FD  ++ +      +D     V    SD  
Sbjct: 24  TKASHTEYDGDASNDDASDDYVSGDDNASSFDDVSDGSSDGDDVSDG--DDVSNGSSDGD 81

Query: 623 YVLTENHDVYKVSDGGNKNEKLEDVKDAQEIVLD 724
            V   + D   VSDG N  + + D  D  +  +D
Sbjct: 82  DVSDGSSDGDDVSDGSNDGDDVSDGDDVSDGSID 115


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 566 GTNTDSLIGIVKTNGSDVLYVLT-ENHDVYKVSDGGNKNEKLEDVKDAQEIVLDYSNNLY 742
           G   D L+ ++K +G +++ VLT +N+D     D GN ++ L D  DA   +L+ +   Y
Sbjct: 572 GKLKDVLVTLMKVSGEEIVKVLTNDNND--DDGDDGNDSDFLTDTFDALFAILNENARKY 629


>SB_3800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
 Frame = +2

Query: 422 SLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKT--EKY-GTNTDSLIG 592
           S  +G ++   +      +T+  T E+     D   +FD ++NKT   +Y     D L  
Sbjct: 7   SAVSGTSSSEPQEKPSTESTDSTTAELQKKISDAFDIFDHESNKTVDVRYKPAPEDQLSK 66

Query: 593 IVKTNGSDVL-YVLTENHDVYKVSDGGNKNEKLEDVKDAQEIVLDYSNNLYFYGKDKAPY 769
             +    D   Y+ TE    Y   +G    +  E+V++     +D    + FY KD    
Sbjct: 67  AFEVLDQDKKGYLTTEELTKYMTEEGEAFTQ--EEVEEMLSAAVDPEKGVIFY-KDFVAM 123

Query: 770 VVTED 784
           +V ED
Sbjct: 124 MVVED 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,129,804
Number of Sequences: 59808
Number of extensions: 696039
Number of successful extensions: 1352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5223310765
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)