Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F08_e542_12.seq
         (1593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    35   0.14 
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    31   3.0  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    31   3.0  
AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical ...    30   4.0  
U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical pr...    30   5.2  
U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein...    29   9.1  

>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 35.1 bits (77), Expect = 0.14
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = +2

Query: 383 VNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEK 562
           + D G++E+       +GV   + +         D+     F  KDG  ++  K N TE 
Sbjct: 489 MEDTGQEEWMNFVLEASGVTETVEKMRIAEEKEQDEERRKDFVDKDGRPMYFTKENVTEI 548

Query: 563 YG----TNTDSLIGIVKTNGSDVLYVLTENHDVYKVSD 664
           YG    T  D + GI KT   D L  L  N   Y + D
Sbjct: 549 YGEYEATKIDLINGIYKTMSKDQLDAL--NSTGYSIMD 584


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 107 EFNKIPRCSSQYFLGVVXLIGLIKAAP---VTENNDEKLIVSSELFINEFVQYSSKYDIV 277
           ++ K+     +Y    V +I L   A    VT+  D   + +S+LFI+ FV+ + KYD++
Sbjct: 390 DYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLI 449


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 107 EFNKIPRCSSQYFLGVVXLIGLIKAAP---VTENNDEKLIVSSELFINEFVQYSSKYDIV 277
           ++ K+     +Y    V +I L   A    VT+  D   + +S+LFI+ FV+ + KYD++
Sbjct: 390 DYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLI 449


>AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK380.2 protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
 Frame = +2

Query: 473 SATNDDTTEVYFSAKDG----IYVFDAKTNKTEKYGTNTDSL-------IGIVKT--NGS 613
           S  +DD +E YFS  D     +   D +    EK     +SL       IG+++T  + +
Sbjct: 158 STISDDDSEDYFSVTDEYVSLLQEIDKEIEILEKNSAFEESLLQEKDERIGLLETQLHAA 217

Query: 614 DVLYVLTENHDVYKVSDGGNKNEKLEDVK 700
           + + V   NH++YK  +   + + LE+++
Sbjct: 218 EAINVAKANHELYKCQEKDRRIDNLENIE 246


>U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical
           protein C30G4.5 protein.
          Length = 85

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 270 SYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFIN 169
           S LDE W +S  + SDD++   S  S TG  F N
Sbjct: 40  SILDEKWRSSCSDDSDDSLPVGSYIS-TGQCFFN 72


>U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein
           721 protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = +2

Query: 449 ILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYV 628
           I + G D    +  T +   + +D   V + K  +  +   NT SL  I     S + YV
Sbjct: 399 IQQKGEDVQTIDPATYDK--NIRDTYVVKELKATRNIRPSFNT-SLGYIGGLIYSGIFYV 455

Query: 629 LTENHDVYKVSDGGNKNEKLEDVKDAQEI 715
                + + +  G   NEKL  VKDA+EI
Sbjct: 456 FGRGIEPWTLGHGKKDNEKLIPVKDAKEI 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,411,832
Number of Sequences: 27780
Number of extensions: 553302
Number of successful extensions: 1182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4618609610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)