Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F08_e542_12.seq
         (1593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    27   0.34 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          27   0.45 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    24   4.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   5.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   9.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   9.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 27.5 bits (58), Expect = 0.34
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 428  KNGVATKILETGTDASATND-DTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKT 604
            KNG    ++   T  SA ND DT  V   +K      +A+ N T     N  + IG    
Sbjct: 980  KNGKPPSVVSRSTQTSANNDKDTNAVVTQSK------EARDNITATKQLNNKARIGNGPI 1033

Query: 605  NGSDV 619
            N SDV
Sbjct: 1034 NQSDV 1038


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 0.45
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 110 FNKIPRCSSQYFLGVVXLIGLIKAAPVTENNDEKLIVSSELFINEFV 250
           F+  P   S YFLG   L+    A+P TE +       S+  I  FV
Sbjct: 361 FDVKPEFGSIYFLGNYSLVPTTTASPTTEPSTTTSTTISQKHIKVFV 407


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 102 HRMICLNLVPNXLQPGGXP 46
           H+M  +N+VP  + P G P
Sbjct: 67  HKMASMNIVPYHMSPYGHP 85


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 731 SNNLKRFLARLSHPLIFHFCYHRQTLCKHRDFLSKRIEHRNRL 603
           SN++   + R S           Q   +HRD LS R+E+R+ +
Sbjct: 703 SNSMGAVMTRNSEMFSSLLSDTEQHFRQHRDSLSPRVENRSAI 745


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 916 GPVTEMIXTWSPAXYTAPS 860
           GP  E++  WS   YT  S
Sbjct: 151 GPAMELVYAWSTIDYTYDS 169


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 240 FMNSSDDTMSFSSLFSVTGAAFINPIKXTTPKKYCE 133
           F  + D T S SS+F++   +    I  T P KY +
Sbjct: 261 FYIAMDVTCSTSSIFNLVAISIDRYIAVTQPIKYAK 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 356,986
Number of Sequences: 438
Number of extensions: 7369
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 56104125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)