Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F08_e542_12.seq
         (1593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    32   0.91 
At3g27900.1 68416.m03481 hypothetical protein                          31   1.6  
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea...    29   8.5  

>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 32.3 bits (70), Expect = 0.91
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 587 IGIVKTNGSDVLYVLTENHDVYKVSDGGNKNEKLEDVKDAQEIVLDY 727
           +G  +  G+D++  +++NH   K  D  NK  + E VKD+     DY
Sbjct: 235 VGAAQLRGNDIVEKVSDNHASEKGHDKSNKVRREEHVKDSSRKKEDY 281


>At3g27900.1 68416.m03481 hypothetical protein
          Length = 244

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +2

Query: 497 EVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYV---LTENHDVYKVSDG 667
           E Y   K+G+Y+ D K+N+ E +  +  S +  ++     VL +    + + +V K SD 
Sbjct: 103 ETYIKPKNGVYLADVKSNQWEVFVKSCKSFVFGIRELDRIVLILGKRESSSCEVVKTSDF 162

Query: 668 GNKNEKLEDVKDAQEIVLDYS 730
            + N++L+ +++      D S
Sbjct: 163 EHCNQELKKLEETLRSAKDVS 183


>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); U3
           snoRNP-associated 55-kDa protein, Homo sapiens,
           gb:NP_004695;  Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) [Podospora anserina]
          Length = 504

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 476 ATNDDTTEVYFSAKDG-IYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVLYVLTENH 643
           A +DD +  + ++KDG I  +D  + KT+KY   +D    I+K++G  +     +NH
Sbjct: 168 ALSDDDSRGFSASKDGTIMHWDVSSGKTDKYIWPSDE---ILKSHGMKLREPRNKNH 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,672,368
Number of Sequences: 28952
Number of extensions: 507623
Number of successful extensions: 1097
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4298812032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)