Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_F07_e534_11.seq
(1510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 207 4e-54
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 202 1e-52
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 55 2e-08
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 5.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 5.1
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 5.1
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 6.7
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 27 6.7
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 207 bits (505), Expect = 4e-54
Identities = 101/184 (54%), Positives = 133/184 (72%)
Frame = +2
Query: 107 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 286
+ I ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 287 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 466
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE T++EIRNFLGE+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 467 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSE 646
R +K PGVTV S KDE+IIEGNSLE+VS SAA I+Q V+NKDIRKFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181
Query: 647 KTTV 658
+ +
Sbjct: 182 RGNI 185
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 202 bits (493), Expect = 1e-52
Identities = 98/184 (53%), Positives = 132/184 (71%)
Frame = +2
Query: 107 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 286
+ I ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 287 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 466
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE T++EIRNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 467 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSE 646
R +K PGVTV S KDE+I+EGNSLE+VS SAA I+Q V+NKDIRKFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181
Query: 647 KTTV 658
+ +
Sbjct: 182 RGNI 185
>SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 55.2 bits (127), Expect = 2e-08
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = +3
Query: 798 LEEYVSRMKETQKHIYYITGENRDX--SC*LIICGKSQEAWV*GCIHD*PIDEXVVQQMK 971
LE+Y+++M E QK+IY+ITGE++ + + ++++ V + PIDE V Q+K
Sbjct: 452 LEDYITKMPEHQKNIYFITGESKQAVENSPFLEIFRAKKFDVLFMVD--PIDEYAVTQLK 509
Query: 972 EFDGKTLVSXXKXGLKL 1022
EF+GK LV+ K GL+L
Sbjct: 510 EFEGKKLVNITKDGLEL 526
Score = 35.5 bits (78), Expect = 0.019
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 739 PKLSDLLRYHTSASGDEACSLKSMFPA*KKPKNTSITLLVRTXTXVANSSFVERVKKRGY 918
P L+ LLRY++ S D+ SL+ + + + + V NS F+E + + +
Sbjct: 432 PALAKLLRYNSLNSPDDLISLEDYITKMPEHQKNIYFITGESKQAVENSPFLEIFRAKKF 491
Query: 919 EXVYMTDPL 945
+ ++M DP+
Sbjct: 492 DVLFMVDPI 500
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 950 LINGSVMYTXSYPRFLTLS-TNDELATXVXVLTSNVIDVFLGF 825
+++GSV YT +YP T+S T + + V+T V+ +G+
Sbjct: 484 VVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTETVVSGSVGY 526
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 950 LINGSVMYTXSYPRFLTLS-TNDELATXVXVLTSNVIDVFLGF 825
+++GSV YT +YP T+S T + + V+T V+ +G+
Sbjct: 519 VVSGSVGYTTAYPAHDTVSGTVEVVEPTAGVVTETVVSGSVGY 561
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 950 LINGSVMYTXSYPRFLTLS-TNDELATXVXVLTSNVIDVFLGF 825
+++GSV YT +YP T+S T + + V+T V+ +G+
Sbjct: 554 VVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTETVVSGSVGY 596
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 950 LINGSVMYTXSYPRFLTLS-TNDELATXVXVLTSNVIDVFLGF 825
+++GSV YT +YP T+S T + + V+T V+ +G+
Sbjct: 589 VVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTETVVSGSVGY 631
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 950 LINGSVMYTXSYPRFLTLS-TNDELATXVXVLTSNVIDVFLGF 825
+++GSV YT +YP T+S T + + V+T V+ +G+
Sbjct: 624 VVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTETVVSGSVGY 666
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 950 LINGSVMYTXSYPRFLTLS-TNDELATXVXVLTSNVIDVFLGF 825
+++GSV YT +YP T+S T + + V+T V+ +G+
Sbjct: 659 VVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTETVVSGSVGY 701
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 950 LINGSVMYTXSYPRFLTLS-TNDELATXVXVLTSNVIDVFLGF 825
+++GSV YT +YP T+S T + + V+T V+ +G+
Sbjct: 694 VVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTETVVSGSVGY 736
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 950 LINGSVMYTXSYPRFLTLS-TNDELATXVXVLTSNVIDVFLGF 825
+++GSV YT +YP T+S T + + V+T V+ +G+
Sbjct: 729 VVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTETVVSGSVGY 771
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/90 (21%), Positives = 44/90 (48%)
Frame = +2
Query: 167 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 346
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 347 VTKGFQYKMRAVYAHFPINCVTTEGNTIIE 436
++K + + CV T TI++
Sbjct: 1170 LSKIPTNLLDLPMFQVYLGCVDTLIQTIVK 1199
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 132 TFWFATICFILGLCLT 85
TFWF +IC IL +C +
Sbjct: 281 TFWFQSICLILYICFS 296
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 503 NSPKQKDELIIEGNSLEDVSSSAALIQQS 589
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +2
Query: 548 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 655
+ D+S+SA + T + N+++ K +GL+++ +T+
Sbjct: 78 MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,634,317
Number of Sequences: 5004
Number of extensions: 85867
Number of successful extensions: 253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 844406124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -