Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F07_e534_11.seq
         (1510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        173   2e-43
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       68   2e-11
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       44   3e-04
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               33   0.79 
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 31   3.2  
SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)                  31   3.2  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  173 bits (422), Expect = 2e-43
 Identities = 76/136 (55%), Positives = 105/136 (77%)
 Frame = +2

Query: 80  ACVKQSPNMKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQ 259
           +C+     MK I+A++ V IP+++ V VKSR+VTV GPRG LKRNF+HL +++  V   +
Sbjct: 549 SCLSCIVAMKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDK 608

Query: 260 LKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEI 439
           ++V+ WF S+KELA V+T+ +H+ENMIKGV  G++YKMRAVYAHFPIN    E  T++E+
Sbjct: 609 VRVDVWFASRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEV 668

Query: 440 RNFLGEKYIRRVKMAP 487
           RNFLGEKY+RRV+M P
Sbjct: 669 RNFLGEKYVRRVRMRP 684


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 35/76 (46%), Positives = 47/76 (61%)
 Frame = +3

Query: 798  LEEYVSRMKETQKHIYYITGENRDXSC*LIICGKSQEAWV*GCIHD*PIDEXVVQQMKEF 977
            L++YV+RMKE QK IY+ITGE++D         + +           PIDE  +QQ+KE+
Sbjct: 408  LKDYVTRMKENQKDIYFITGESKDQVSHSAFVERVKSRGFEVLYMVEPIDEYAIQQLKEY 467

Query: 978  DGKTLVSXXKXGLKLP 1025
            DGK LVS  K GL+LP
Sbjct: 468  DGKKLVSVTKEGLELP 483



 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 31/68 (45%), Positives = 45/68 (66%)
 Frame = +1

Query: 742 KLSDLLRYHTSASGDEACSLKSMFPA*KKPKNTSITLLVRTXTXVANSSFVERVKKRGYE 921
           KL+DLLRYH+S+SGDE  SLK      K+ +     +   +   V++S+FVERVK RG+E
Sbjct: 389 KLADLLRYHSSSSGDELTSLKDYVTRMKENQKDIYFITGESKDQVSHSAFVERVKSRGFE 448

Query: 922 XVYMTDPL 945
            +YM +P+
Sbjct: 449 VLYMVEPI 456


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +2

Query: 572 ALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 661
           ALIQQST VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 2   ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 798  LEEYVSRMKETQKHIYYITGENR-DXSC*LIICGKSQEAWV*GCIHD*PIDEXVVQQMKE 974
            L EY+ RMKE Q  IY++ G NR +      +    +E +    + + P+DE  +Q + E
Sbjct: 508  LAEYIERMKEKQDVIYFMAGHNRKEVESSPFVEKLLKEGYEVLYLIE-PVDEYCMQSLPE 566

Query: 975  FDGKTLVSXXKXGLKL 1022
            F+GK   +  K GLK+
Sbjct: 567  FEGKKFQNVAKEGLKI 582



 Score = 39.9 bits (89), Expect = 0.005
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +1

Query: 742 KLSDLLRYHTSASGDEACSLKSMFPA*KKPKNTSITLLVRTXTXVANSSFVERVKKRGYE 921
           +L+ LLR+++S S  +  SL       K+ ++    +       V +S FVE++ K GYE
Sbjct: 489 RLAKLLRFYSSNSEKDMTSLAEYIERMKEKQDVIYFMAGHNRKEVESSPFVEKLLKEGYE 548

Query: 922 XVYMTDPL 945
            +Y+ +P+
Sbjct: 549 VLYLIEPV 556


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 32.7 bits (71), Expect = 0.79
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +2

Query: 419 GNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 592
           G  ++ +++ LG++    +      T +       K+EL    +SLE+VS   A +Q S 
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255

Query: 593 TVKNKDIRKFLDGLYVSEK 649
             K+++I      L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 458 KYIRRVKMAPGVTVVNSPKQKDELIIE-GNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 634
           K   R ++A G+   ++P Q + LI   G   EDV S+ +L +  +      + KF DG 
Sbjct: 25  KRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSTFSLTEAESKDYKVVVEKF-DGH 83

Query: 635 YVSEKTTV 658
           +V ++ T+
Sbjct: 84  FVKKRNTI 91


>SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)
          Length = 391

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 21/47 (44%), Positives = 24/47 (51%)
 Frame = +1

Query: 70  SARGLCQTKP*YEANSCKPKGEDS*ESHRPCEIAFGDSERSSRSSKT 210
           + R LC  KP   A     K EDS ES +PC +  G S R  R SKT
Sbjct: 7   TTRKLCFRKPGQNAGE---KTEDSSESEQPCRMQHG-SLRVKRKSKT 49


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
 Frame = +2

Query: 206  KRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY-KMRAV 382
            KR   H+   +  +N ++   +K    K+ LAA + V +   N+ KGVT+G    K R V
Sbjct: 924  KRKLTHV---VDGINTKKELRKKQEDMKRALAAAKVVKTERVNVAKGVTQGMPVTKGRVV 980

Query: 383  YAHFPI--NCVTTEGNTIIE-IRNFLGEKYIRRVKMAPGVTVVNS-PKQKDELIIEG 541
                PI    V T+G  + + +    G    + + + PG  V    P  +  ++ +G
Sbjct: 981  TQGMPITPGRVVTQGKVVTQGMPVTPGRVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,533,156
Number of Sequences: 59808
Number of extensions: 660901
Number of successful extensions: 1522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4894653009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)