BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030725E6_F07_e534_11.seq (1510 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 241 1e-63 Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical pr... 71 3e-12 Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 36 0.057 AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 33 0.53 U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical p... 33 0.70 >AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal protein, large subunitprotein 9 protein. Length = 189 Score = 241 bits (589), Expect = 1e-63 Identities = 110/186 (59%), Positives = 142/186 (76%) Frame = +2 Query: 104 MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFG 283 MK I +N V PE +T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60 Query: 284 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKY 463 +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK Sbjct: 61 VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120 Query: 464 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVS 643 +RRV + GV S QKDE+++EGN ++ VS +AA IQQST VK KDIRKFLDG+YVS Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVS 180 Query: 644 EKTTVV 661 EKTT+V Sbjct: 181 EKTTIV 186 >Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical protein C47E8.5 protein. Length = 702 Score = 70.5 bits (165), Expect = 3e-12 Identities = 38/84 (45%), Positives = 49/84 (58%) Frame = +3 Query: 798 LEEYVSRMKETQKHIYYITGENRDXSC*LIICGKSQEAWV*GCIHD*PIDEXVVQQMKEF 977 L+EYVSRMKE Q IYYITGE++D + + PIDE VQQ+KE+ Sbjct: 447 LKEYVSRMKENQTQIYYITGESKDVVAASAFVERVKSRGFEVLYMCDPIDEYCVQQLKEY 506 Query: 978 DGKTLVSXXKXGLKLPXMRXKENR 1049 DGK LVS K GL+LP ++ + Sbjct: 507 DGKKLVSVTKEGLELPETEEEKKK 530 Score = 58.8 bits (136), Expect = 9e-09 Identities = 33/68 (48%), Positives = 41/68 (60%) Frame = +1 Query: 742 KLSDLLRYHTSASGDEACSLKSMFPA*KKPKNTSITLLVRTXTXVANSSFVERVKKRGYE 921 KLSD LRY TSA GDE SLK K+ + + + VA S+FVERVK RG+E Sbjct: 429 KLSDFLRYSTSA-GDEPTSLKEYVSRMKENQTQIYYITGESKDVVAASAFVERVKSRGFE 487 Query: 922 XVYMTDPL 945 +YM DP+ Sbjct: 488 VLYMCDPI 495 >Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical protein T05E11.3 protein. Length = 760 Score = 36.3 bits (80), Expect = 0.057 Identities = 18/66 (27%), Positives = 36/66 (54%) Frame = +1 Query: 742 KLSDLLRYHTSASGDEACSLKSMFPA*KKPKNTSITLLVRTXTXVANSSFVERVKKRGYE 921 +L+ LLR+ +S D+ +L + K+ ++ + + V S FVER+ +GYE Sbjct: 482 RLAKLLRFQSSNDADKTTTLAAYVERMKEKQDAIYYMAGTSRKEVETSPFVERLIAKGYE 541 Query: 922 XVYMTD 939 +++T+ Sbjct: 542 VLFLTE 547 >AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical protein Y47G6A.29 protein. Length = 2460 Score = 33.1 bits (72), Expect = 0.53 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Frame = +2 Query: 221 HLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 385 H+ D++++ ++ ++ WF ++L ++RT C S ++ I +T KGF + M+A + Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420 Query: 386 AHF 394 +F Sbjct: 421 LNF 423 >U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical protein R151.7a protein. Length = 672 Score = 32.7 bits (71), Expect = 0.70 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = +3 Query: 798 LEEYVSRMKETQKHIYYITGENRD--XSC*LIICGKSQEAWV*GCIHD*PIDEXVVQQMK 971 L +YV RM+E QK IYY+ NR S KSQ V ++D P DE V + Sbjct: 446 LGDYVKRMQEGQKEIYYMYANNRQLAESSPYYEVIKSQNKEV-LFLYD-PADEVVFLGLG 503 Query: 972 EFDGKTLVSXXK 1007 +F K LV K Sbjct: 504 QFGMKQLVPVEK 515 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 26,436,123 Number of Sequences: 27780 Number of extensions: 499822 Number of successful extensions: 1173 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1170 length of database: 12,740,198 effective HSP length: 84 effective length of database: 10,406,678 effective search space used: 4349991404 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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