Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F07_e534_11.seq
         (1510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   241   1e-63
Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    71   3e-12
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    36   0.057
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    33   0.53 
U00036-14|ABC71802.1|  672|Caenorhabditis elegans Hypothetical p...    33   0.70 

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  241 bits (589), Expect = 1e-63
 Identities = 110/186 (59%), Positives = 142/186 (76%)
 Frame = +2

Query: 104 MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFG 283
           MK I +N  V  PE +T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 284 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKY 463
            +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK 
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 464 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVS 643
           +RRV +  GV    S  QKDE+++EGN ++ VS +AA IQQST VK KDIRKFLDG+YVS
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVS 180

Query: 644 EKTTVV 661
           EKTT+V
Sbjct: 181 EKTTIV 186


>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical protein
            C47E8.5 protein.
          Length = 702

 Score = 70.5 bits (165), Expect = 3e-12
 Identities = 38/84 (45%), Positives = 49/84 (58%)
 Frame = +3

Query: 798  LEEYVSRMKETQKHIYYITGENRDXSC*LIICGKSQEAWV*GCIHD*PIDEXVVQQMKEF 977
            L+EYVSRMKE Q  IYYITGE++D         + +           PIDE  VQQ+KE+
Sbjct: 447  LKEYVSRMKENQTQIYYITGESKDVVAASAFVERVKSRGFEVLYMCDPIDEYCVQQLKEY 506

Query: 978  DGKTLVSXXKXGLKLPXMRXKENR 1049
            DGK LVS  K GL+LP    ++ +
Sbjct: 507  DGKKLVSVTKEGLELPETEEEKKK 530



 Score = 58.8 bits (136), Expect = 9e-09
 Identities = 33/68 (48%), Positives = 41/68 (60%)
 Frame = +1

Query: 742 KLSDLLRYHTSASGDEACSLKSMFPA*KKPKNTSITLLVRTXTXVANSSFVERVKKRGYE 921
           KLSD LRY TSA GDE  SLK      K+ +     +   +   VA S+FVERVK RG+E
Sbjct: 429 KLSDFLRYSTSA-GDEPTSLKEYVSRMKENQTQIYYITGESKDVVAASAFVERVKSRGFE 487

Query: 922 XVYMTDPL 945
            +YM DP+
Sbjct: 488 VLYMCDPI 495


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 36.3 bits (80), Expect = 0.057
 Identities = 18/66 (27%), Positives = 36/66 (54%)
 Frame = +1

Query: 742 KLSDLLRYHTSASGDEACSLKSMFPA*KKPKNTSITLLVRTXTXVANSSFVERVKKRGYE 921
           +L+ LLR+ +S   D+  +L +     K+ ++    +   +   V  S FVER+  +GYE
Sbjct: 482 RLAKLLRFQSSNDADKTTTLAAYVERMKEKQDAIYYMAGTSRKEVETSPFVERLIAKGYE 541

Query: 922 XVYMTD 939
            +++T+
Sbjct: 542 VLFLTE 547


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +2

Query: 221 HLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 385
           H+  D++++  ++  ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 386 AHF 394
            +F
Sbjct: 421 LNF 423


>U00036-14|ABC71802.1|  672|Caenorhabditis elegans Hypothetical
            protein R151.7a protein.
          Length = 672

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 798  LEEYVSRMKETQKHIYYITGENRD--XSC*LIICGKSQEAWV*GCIHD*PIDEXVVQQMK 971
            L +YV RM+E QK IYY+   NR    S       KSQ   V   ++D P DE V   + 
Sbjct: 446  LGDYVKRMQEGQKEIYYMYANNRQLAESSPYYEVIKSQNKEV-LFLYD-PADEVVFLGLG 503

Query: 972  EFDGKTLVSXXK 1007
            +F  K LV   K
Sbjct: 504  QFGMKQLVPVEK 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,436,123
Number of Sequences: 27780
Number of extensions: 499822
Number of successful extensions: 1173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4349991404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)