Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_F06_e526_12.seq
(1589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 82 2e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 6e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 58 3e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 54 5e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 1e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 42 2e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 40 0.001
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 37 0.009
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 37 0.009
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 36 0.015
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 36 0.020
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.036
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 34 0.047
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 33 0.11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 32 0.25
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 31 0.44
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 31 0.58
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 30 0.77
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 30 1.0
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 2.4
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 29 2.4
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 28 3.1
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 28 3.1
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 81.8 bits (193), Expect = 2e-16
Identities = 41/107 (38%), Positives = 60/107 (56%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
A+HG K + VL +F G+ ++ ++EDY+HR
Sbjct: 398 AIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHV-FNYDFPGNTEDYVHR 456
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
IGRTGR+ AKGT+Y +FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 457 IGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 60.5 bits (140), Expect = 6e-10
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = -2
Query: 760 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQII 626
EDY+HRIGRTGR+ KGT+ FFTP + A +LV+VL++A Q I
Sbjct: 498 EDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDI 542
Score = 30.7 bits (66), Expect = 0.58
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
Q R + + K +LVATDVAARGLD+ +++
Sbjct: 452 QGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQL 487
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 58.4 bits (135), Expect = 3e-09
Identities = 34/107 (31%), Positives = 51/107 (47%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
++HG +T + L F GR ++ + + +DY+HR
Sbjct: 459 SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHV-INYDLPTDIDDYVHR 517
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
IGRTGR+ G + AFF +N AK+L+ +LQEANQ L +MA
Sbjct: 518 IGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 54.0 bits (124), Expect = 5e-08
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
N EDY+HR+GRTGR+ G + F TP + A D+ L+ + Q + +LQ++A
Sbjct: 747 NHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLA 802
Score = 30.7 bits (66), Expect = 0.58
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 906 KPQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
K Q +R + K +L+AT V ARGLDV+ +++
Sbjct: 702 KDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQL 739
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 46.0 bits (104), Expect = 1e-05
Identities = 31/123 (25%), Positives = 52/123 (42%)
Frame = -2
Query: 1006 RXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXXXX 827
R +IFV+ E+ + + D + +G +HG A++ L +F +G +
Sbjct: 290 RVVIFVQDIERAKALYTELLFD-EIHVGVIHGELPQAKREEALAKFRKGEI-WVLIATDL 347
Query: 826 XXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVL 647
M + S YIHRIGRTGR+ G + FFT + K + V+
Sbjct: 348 LARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVM 407
Query: 646 QEA 638
+ +
Sbjct: 408 RSS 410
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.9 bits (94), Expect = 2e-04
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = -2
Query: 1000 IIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXX 821
IIFV LK I + A + +HG K+ ++ + Q R +
Sbjct: 520 IIFVNLKRNIEAIAKQLNA-IGWHAVTLHGSKSQEQRERAIEQL---RNKTADILVATDI 575
Query: 820 XXXXXXXQNM*LILI--IQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVL 647
N+ L+L + S EDY HRIGRTGR+ GT+ F P ++ DL +L
Sbjct: 576 AGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLL 635
Query: 646 QEA 638
+
Sbjct: 636 SRS 638
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 39.5 bits (88), Expect = 0.001
Identities = 27/118 (22%), Positives = 51/118 (43%)
Frame = -2
Query: 1012 VQRXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXX 833
V + +IF + K + + + D + +MHG A++ ++ +F G +
Sbjct: 258 VTQAVIFCNTRRKVDWLTEQL-TERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTD 316
Query: 832 XXXXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 659
++ + + + E+YIHRIGR GR KG S F T + R +++
Sbjct: 317 LLARGIDVQQV-SLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREI 373
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 903 PQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
PQ+ER + Y K I VATDV RG+D+E + I
Sbjct: 330 PQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNI 366
Score = 34.3 bits (75), Expect = 0.047
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEAN 635
+S + Y+HR+GR GR KG + F + Q D + E N
Sbjct: 374 DSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVN 418
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 36.7 bits (81), Expect = 0.009
Identities = 25/118 (21%), Positives = 51/118 (43%)
Frame = -2
Query: 1012 VQRXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXX 833
+ + +IF + K + K + + + + +MHG + ++ F +G +
Sbjct: 260 ITQAVIFCNSRRKVDWLTEKMR-EANFTVTSMHGEMPQKERDAIMQDFRQGNSR-VLICT 317
Query: 832 XXXXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 659
++ + + + E+YIHRIGR+GR KG + F T + R +D+
Sbjct: 318 DIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDI 375
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -2
Query: 766 SSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 620
S++DY+HRIGRT R+ G + F P S L S + AN + P
Sbjct: 526 STDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSV-SANILEQP 573
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 879 YXNXKRVGSSILVATDVAARGLDVEGIKI 793
+ + + GS IL+ TDVAARGLD+ + +
Sbjct: 489 FSSSEDSGSHILLCTDVAARGLDLPNVDL 517
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 35.5 bits (78), Expect = 0.020
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKICD*F*LSKIP 763
Q+ER + + ILVATDVA+RGLD+ +++ F L + P
Sbjct: 294 QRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDP 339
Score = 31.1 bits (67), Expect = 0.44
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 760 EDYIHRIGRTGRSKAKGTSYAFFT 689
+DYIHR+GRT R+ G S + T
Sbjct: 340 DDYIHRVGRTARAGRSGESISIVT 363
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 34.7 bits (76), Expect = 0.036
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSY 701
++++DYIHRIGRTGR+ G +Y
Sbjct: 372 SNTDDYIHRIGRTGRAGKTGEAY 394
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 894 ERXEYYXNXKRVGSSILVATDVAARGLDVEGI 799
+R + ++ S IL ATDV ARG+D I
Sbjct: 331 QRRSITESFRKCQSGILFATDVVARGMDFPNI 362
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 34.3 bits (75), Expect = 0.047
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSYAFFTPSN 680
++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 405 SNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 757 DYIHRIGRTGR-SKAKGTSYAFFTPS 683
DYIHR+GRT R +K G S F PS
Sbjct: 419 DYIHRVGRTARGTKGTGKSLMFLAPS 444
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGI 799
QQ R + IL+ T+VAARGLD+ +
Sbjct: 372 QQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAV 405
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 31.9 bits (69), Expect = 0.25
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
Q++R + + + L+ATDVA+RG+D++GI++
Sbjct: 540 QEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEV 575
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.1 bits (67), Expect = 0.44
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 775 IQNSSEDYIHRIGRTGRSKAKGTSYAFFT 689
I S+ YIHR+GRT R+ G S A T
Sbjct: 362 IPTDSKAYIHRVGRTARAGRAGKSIALVT 390
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDV 808
Q R K S LVATDVAARGLD+
Sbjct: 321 QSNRLGALNKFKSGARSTLVATDVAARGLDI 351
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 30.7 bits (66), Expect = 0.58
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGI 799
Q++R + K +LV TDVAARG+D+ +
Sbjct: 425 QKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSV 458
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 775 IQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 659
+ ++++ Y+HR GRT R+ G S P Q K L
Sbjct: 466 VPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRL 504
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 760 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVS 653
+ YIHR+GRT R G + PS K L S
Sbjct: 367 DTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLES 402
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 766 SSEDYIHRIGRTGRSKAKGTSYAFFT 689
++E Y+HRIGR+GR +G + +F +
Sbjct: 361 NAETYLHRIGRSGRFGHRGLAISFIS 386
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 766 SSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 620
SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 248 SSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 754 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 599
++HR+GRT R+ G +Y+ ++ DL L S Q+++ +D
Sbjct: 430 FVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQVKTDSD 481
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDV 808
Q+ R N + +++LV TDVA+RG+D+
Sbjct: 382 QEARLNEINNFRLGKTNLLVVTDVASRGIDI 412
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 766 SSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQ 644
S Y+HRIGRT R+ +G ++ LV L+
Sbjct: 517 SVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQLR 557
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 760 EDYIHRIGRTGRSKAKGTSYAF 695
+ Y+HRIGRTGR G S F
Sbjct: 440 QTYLHRIGRTGRFGRVGVSINF 461
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = -3
Query: 864 RVGSS-ILVATDVAARGLDVEGIKI 793
RVG+S +LV T+V ARG+DV + +
Sbjct: 399 RVGTSKVLVTTNVIARGIDVSQVNL 423
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 170 NVNSMKYLHETTLIF*RIISKSSINTLVYLN----NLQQITVKKISQYEHNIHTNLCKFQ 337
N+ +YL + T + ++K S NT+ LN N++++ ++++ I + + Q
Sbjct: 820 NIELQRYLQQLTQYSEKFLNKESENTVGLLNAPGENIEELVDNQLAETAQAIQQAILRLQ 879
Query: 338 N 340
N
Sbjct: 880 N 880
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,651,665
Number of Sequences: 5004
Number of extensions: 79181
Number of successful extensions: 209
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 897924822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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