Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F06_e526_12.seq
         (1589 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    52   5e-08
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   6.0  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
            protein.
          Length = 596

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
 Frame = -2

Query: 1000 IIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXX 821
            ++FVE K     +     ++      ++HG +    +   L  F  GR            
Sbjct: 427  LVFVETKRNADYL-ASLMSETQFPTTSIHGDRLQREREMALYDFKSGRMDVLIATSVAAR 485

Query: 820  XXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSR-QAKDLVSVLQ 644
                    ++ +   +  S +DY+HRIGRTGR   KG + +F+ P   R  A DLV +L 
Sbjct: 486  GLDIKNVNHV-VNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPEADRAMASDLVKILT 544

Query: 643  EANQII 626
            +A Q +
Sbjct: 545  QAGQSV 550


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 275 ITVKKISQYEHNIHTNL 325
           I ++KI QYE N HT +
Sbjct: 657 IALEKIQQYERNCHTQI 673


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,222,136
Number of Sequences: 2352
Number of extensions: 21924
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 68
effective length of database: 404,043
effective search space used: 186263823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)