Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F06_e526_12.seq
         (1589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       53   8e-09
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   9.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 52.8 bits (121), Expect = 8e-09
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
 Frame = -2

Query: 1030 QNXRPXVQRXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQ 851
            +N    +   ++FVE+K+K   I     ++ +    ++HG +   ++   L  F  GR  
Sbjct: 445  ENDSGTLGGTLVFVEMKKKADFIAV-FLSENNYPTTSIHGDRLQRQREEALADFKSGRMS 503

Query: 850  YTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQ 671
                              ++ +   +    ++Y+HRIGRTGR   +G + +FF P     
Sbjct: 504  ILVATAVAARGLDIKNVSHV-INYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAP 562

Query: 670  AK-DLVSVLQEANQII 626
             + DLV +L++ANQ +
Sbjct: 563  LRGDLVRILKQANQSV 578


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 332 IYTD*CVYYVHTVIFFLL 279
           IY D  +Y + T+IFFL+
Sbjct: 206 IYADFPLYELSTIIFFLI 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,409
Number of Sequences: 438
Number of extensions: 6196
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55984500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)