Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_F06_e526_12.seq
(1589 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 87 3e-17
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 83 4e-16
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 75 1e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 73 4e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 73 4e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 73 4e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 69 1e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 63 4e-10
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 59 9e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 59 9e-09
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 57 3e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 57 3e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 55 1e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 52 1e-06
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 45 1e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 44 2e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 44 4e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 42 9e-04
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 42 0.001
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 42 0.001
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 41 0.003
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 40 0.003
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 40 0.005
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 38 0.014
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 38 0.018
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 38 0.024
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 38 0.024
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 38 0.024
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 37 0.042
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 37 0.042
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 37 0.042
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 36 0.056
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 36 0.098
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 36 0.098
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 36 0.098
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 33 0.39
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 33 0.39
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 33 0.69
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 33 0.69
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 33 0.69
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 32 0.91
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 31 1.6
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 31 1.6
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 31 1.6
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 31 2.1
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 31 2.1
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 31 2.1
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 31 2.1
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 31 2.8
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 31 2.8
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 31 2.8
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 31 2.8
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 6.4
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 6.4
At2g33320.1 68415.m04084 C2 domain-containing protein low simila... 29 8.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 87.0 bits (206), Expect = 3e-17
Identities = 49/134 (36%), Positives = 75/134 (55%)
Frame = -2
Query: 1006 RXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXXXX 827
R ++F++ K+ I + + D L ++HG K+ A + VL +F G+
Sbjct: 346 RILVFLDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFRSGKSPIMTATDVA 404
Query: 826 XXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVL 647
+ + + S EDY+HRIGRTGR+ AKGT+Y FFT +N+R AK+L ++L
Sbjct: 405 ARGLDVKDVKYV-INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNIL 463
Query: 646 QEANQIISPQLQSM 605
QEA Q +SP+L SM
Sbjct: 464 QEAGQKVSPELASM 477
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 83.4 bits (197), Expect = 4e-16
Identities = 47/134 (35%), Positives = 72/134 (53%)
Frame = -2
Query: 1006 RXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXXXX 827
+ +IFVE K + + + D L A+HG KT + + VL +F GR
Sbjct: 412 KILIFVETKRGCDQVTRQLRMDGWPAL-AIHGDKTQSERDRVLAEFKSGRSPIMTATDVA 470
Query: 826 XXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVL 647
+ + + N+ EDYIHRIGRTGR+ AKG ++ FFT N++ A++LV +L
Sbjct: 471 ARGLDVKDIKCV-VNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKIL 529
Query: 646 QEANQIISPQLQSM 605
QEA Q++ P L ++
Sbjct: 530 QEAGQVVPPTLSAL 543
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 75.4 bits (177), Expect = 1e-13
Identities = 39/107 (36%), Positives = 56/107 (52%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
A+HG K+ A + VL QF GR + + N EDY+HR
Sbjct: 502 AIHGDKSQAERDDVLNQFRSGRTP-VLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHR 560
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
IGRTGR+ A G +Y FF +++ A DL+ +L+ ANQ + PQ++ MA
Sbjct: 561 IGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMA 607
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 73.3 bits (172), Expect = 4e-13
Identities = 38/107 (35%), Positives = 56/107 (52%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
A+HG K+ + VL QF GR + + + N EDY+HR
Sbjct: 431 AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAV-VNYDFPNGVEDYVHR 489
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
IGRTGR+ A G ++ FF +S+ A DL+ +L+ ANQ + PQ++ MA
Sbjct: 490 IGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 73.3 bits (172), Expect = 4e-13
Identities = 38/107 (35%), Positives = 56/107 (52%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
A+HG K+ + VL QF GR + + + N EDY+HR
Sbjct: 431 AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAV-VNYDFPNGVEDYVHR 489
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
IGRTGR+ A G ++ FF +S+ A DL+ +L+ ANQ + PQ++ MA
Sbjct: 490 IGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 73.3 bits (172), Expect = 4e-13
Identities = 38/107 (35%), Positives = 56/107 (52%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
A+HG K+ + VL QF GR + + + N EDY+HR
Sbjct: 431 AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAV-VNYDFPNGVEDYVHR 489
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
IGRTGR+ A G ++ FF +S+ A DL+ +L+ ANQ + PQ++ MA
Sbjct: 490 IGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 68.5 bits (160), Expect = 1e-11
Identities = 36/106 (33%), Positives = 53/106 (50%)
Frame = -2
Query: 919 MHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHRI 740
+HG KT + VL QF G+ + + EDY+HRI
Sbjct: 709 IHGDKTQGERDWVLNQFRSGK-SCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRI 767
Query: 739 GRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
GRTGR+ A G ++ FFT + + A DL+ VL+ ANQ + PQ++ +A
Sbjct: 768 GRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIA 813
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 63.3 bits (147), Expect = 4e-10
Identities = 27/51 (52%), Positives = 38/51 (74%)
Frame = -2
Query: 766 SSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 614
++EDY+HRIGRTGR+ KG ++ FFTP N A +LV+VL+EA Q++ L
Sbjct: 446 TTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADL 496
Score = 35.5 bits (78), Expect = 0.098
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -3
Query: 906 KPQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
K Q ER K +LVATDVAARGLD+ +++
Sbjct: 400 KAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEV 437
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 58.8 bits (136), Expect = 9e-09
Identities = 32/107 (29%), Positives = 51/107 (47%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
++HG +T + L F GR ++ + + N +DY+HR
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV-VNFDLPNDIDDYVHR 495
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
IGRTGR+ G + AFF +N++ A+ L ++QEANQ + L A
Sbjct: 496 IGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYA 542
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 58.8 bits (136), Expect = 9e-09
Identities = 32/107 (29%), Positives = 51/107 (47%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
++HG +T + L F GR ++ + + N +DY+HR
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV-VNFDLPNDIDDYVHR 495
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
IGRTGR+ G + AFF +N++ A+ L ++QEANQ + L A
Sbjct: 496 IGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYA 542
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 57.2 bits (132), Expect = 3e-08
Identities = 32/106 (30%), Positives = 49/106 (46%)
Frame = -2
Query: 919 MHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHRI 740
+HG ++ + L F GR ++ + + N +DY+HRI
Sbjct: 435 IHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV-VNFDLPNDIDDYVHRI 493
Query: 739 GRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
GRTGR+ G + AFF +N+ AK L ++QEANQ + L A
Sbjct: 494 GRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYA 539
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 57.2 bits (132), Expect = 3e-08
Identities = 32/107 (29%), Positives = 49/107 (45%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
++HG +T + L F GR ++ + + N +DY+HR
Sbjct: 447 SIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHV-VNFDLPNDIDDYVHR 505
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
IGRTGR+ G + AFF N+ A+ L ++QEANQ + L A
Sbjct: 506 IGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYA 552
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 54.8 bits (126), Expect = 1e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 599
N EDY+HR+GRTGR+ KG + F + +++ A DLV L+ + Q + L+++AD
Sbjct: 855 NHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALAD 911
Score = 31.9 bits (69), Expect = 1.2
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 906 KPQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
K Q +R + K ++L+AT VAARGLDV+ +++
Sbjct: 810 KDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELEL 847
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 51.6 bits (118), Expect = 1e-06
Identities = 21/57 (36%), Positives = 37/57 (64%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 599
N EDY+HR+GRTGR+ KG + F + +++ A DLV L+ + Q + ++++A+
Sbjct: 693 NHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAE 749
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 45.2 bits (102), Expect = 1e-04
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = -2
Query: 928 LGAMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYI 749
+ A+HG K A + L +F G + + I + ++
Sbjct: 500 VAALHGDKDQASRMETLQKFKSG-VHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHV 558
Query: 748 HRIGRTGRSKAK-GTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 602
HRIGRTGR+ + G +Y T +R A +LV+ L A Q + P+L +A
Sbjct: 559 HRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLA 608
Score = 35.1 bits (77), Expect = 0.13
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 906 KPQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIK 796
K Q R E K +L+ATDVAARGLD++ +K
Sbjct: 507 KDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLK 543
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 44.4 bits (100), Expect = 2e-04
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 760 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQA-KDLVSVLQEANQIISPQLQSMAD 599
E+Y+HRIGRTGR G + F + S DL +LQEA Q I P L + D
Sbjct: 479 ENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 533
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 897 QERXEYYXNXKRVGSS-ILVATDVAARGLDVEGIK 796
QE EY + + G +LVATDVA++GLD I+
Sbjct: 433 QEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 467
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor 4A,
putative / eIF-4A, putative
Length = 392
Score = 43.6 bits (98), Expect = 4e-04
Identities = 29/121 (23%), Positives = 53/121 (43%)
Frame = -2
Query: 1021 RPXVQRXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTX 842
R + + IIF ++K + K ++ + + +MHG K + ++ QF + +
Sbjct: 258 RLTINQAIIFCNTRQKVDWLTEKMRSS-NFIVSSMHGDKRQKERDDIMNQFRSFKSRVLI 316
Query: 841 XXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKD 662
++ + I N+ E YIHRIGR GR +G + F S+ + KD
Sbjct: 317 ASDVWARGIDVQTVSHV-INYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKD 375
Query: 661 L 659
+
Sbjct: 376 I 376
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 42.3 bits (95), Expect = 9e-04
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 760 EDYIHRIGRTGRSKAKGTSYAFFTPSNSR-QAKDLVSVLQEANQIISPQLQSM 605
E+Y+HRIGRTGR G + F + S DL +LQEA Q I P L +
Sbjct: 430 ENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAEL 482
Score = 29.1 bits (62), Expect = 8.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 897 QERXEYYXNXKRVGSS-ILVATDVAARGLDVEGIK 796
QE +Y + + G +LVATDVA++GLD I+
Sbjct: 384 QEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQ 418
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor 4A,
putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 41.9 bits (94), Expect = 0.001
Identities = 26/118 (22%), Positives = 49/118 (41%)
Frame = -2
Query: 1012 VQRXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXX 833
+ + +IFV + K + K ++ D + A HG + ++ +F G +
Sbjct: 280 ITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDIIMREFRSGSSR-VLITT 337
Query: 832 XXXXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 659
++ + + E+Y+HRIGR+GR KG + F T + R D+
Sbjct: 338 DLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI 395
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 41.5 bits (93), Expect = 0.001
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -2
Query: 760 EDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 614
E Y HRIGRTGR+ G + +F T ++ DL +L ++N + P+L
Sbjct: 658 EMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPEL 706
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQ--NSSEDYI 749
A+HG + +++ L F +G F N+ LI+ + N++E ++
Sbjct: 377 ALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVP---NVDLIIHYELPNNTETFV 433
Query: 748 HRIGRTGRSKAKGTSYAFFTPSNSRQAK 665
HR GRTGR+ KG++ ++ SR K
Sbjct: 434 HRTGRTGRAGKKGSAILIYSQDQSRAVK 461
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 40.3 bits (90), Expect = 0.003
Identities = 26/118 (22%), Positives = 49/118 (41%)
Frame = -2
Query: 1012 VQRXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXX 833
+ + +IFV + K + K ++ D + A HG + ++ +F G +
Sbjct: 278 ITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDIIMREFRSGSSR-VLITT 335
Query: 832 XXXXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 659
++ + + E+Y+HRIGR+GR KG + F T + R D+
Sbjct: 336 DLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 393
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 39.9 bits (89), Expect = 0.005
Identities = 26/118 (22%), Positives = 49/118 (41%)
Frame = -2
Query: 1012 VQRXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXX 833
+ + +IFV + K + K ++ D + A HG + ++ +F G +
Sbjct: 278 ITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDIIMREFRSGSSR-VLITT 335
Query: 832 XXXXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 659
++ + + E+Y+HRIGR+GR KG + F T + R D+
Sbjct: 336 DLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDI 393
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor 4A,
putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 38.3 bits (85), Expect = 0.014
Identities = 30/136 (22%), Positives = 56/136 (41%)
Frame = -2
Query: 1012 VQRXIIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXX 833
+ + +IF K K + K ++ + + +MHG + ++ +F G +
Sbjct: 274 ITQAVIFCNTKRKVDYLSEKMRSH-NFTVSSMHGDMPQKERDAIMNEFRSGDSR-VLITT 331
Query: 832 XXXXXXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVS 653
++ + + N+ E YIHRIGR+GR KG + F D +
Sbjct: 332 DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV-------KSDDIK 384
Query: 652 VLQEANQIISPQLQSM 605
+L++ Q S Q+ M
Sbjct: 385 ILRDIEQYYSTQIDEM 400
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 37.9 bits (84), Expect = 0.018
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 620
+S+ D++HRIGRT R+ GT + +T +N +DLV ++EA ++ P
Sbjct: 502 SSAVDFLHRIGRTARAGQYGTVTSLYTEAN----RDLVEAIREAVKMGQP 547
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 37.5 bits (83), Expect = 0.024
Identities = 24/101 (23%), Positives = 43/101 (42%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
A+HG + ++ L F +G+F ++ + + N E ++HR
Sbjct: 379 ALHGDISQHQRERTLNAFRQGKFT-VLVATDVASRGLDIPNVDLVIHYELPNDPETFVHR 437
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 620
GRTGR+ +G++ T S R + L + + ISP
Sbjct: 438 SGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISP 478
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 37.5 bits (83), Expect = 0.024
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 754 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVL 647
YIHRIGRTGR+ + G+S + +P +D+ S L
Sbjct: 420 YIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFL 455
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 37.5 bits (83), Expect = 0.024
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
A+HG + A++ L F +G F ++ + + N++E ++HR
Sbjct: 389 ALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNV-DLVIHYELPNNTETFVHR 447
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAK 665
GRTGR+ KG++ +R K
Sbjct: 448 TGRTGRAGKKGSAILIHGQDQTRAVK 473
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar to
RNA helicase involved in rRNA processing GB:6321267 from
[Saccharomyces cerevisiae]c, ontains DEAD and DEAH box
domain
Length = 541
Score = 36.7 bits (81), Expect = 0.042
Identities = 25/132 (18%), Positives = 55/132 (41%)
Frame = -2
Query: 1000 IIFVELKEKRXPIPXKXQADMDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXX 821
+IFV+ KE+ + + + + + G +H + + QF G ++
Sbjct: 384 LIFVQSKERAKELYDELKCE-NIRAGVIHSDLPPGERENAVDQFRAGE-KWVLIATDVIA 441
Query: 820 XXXXXXXQNM*LILIIQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQE 641
N + +S+ YIHRIGR+GR+ G + F+T + +++ + +
Sbjct: 442 RGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMS 501
Query: 640 ANQIISPQLQSM 605
+ + + S+
Sbjct: 502 SGCEVPSWIMSL 513
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 36.7 bits (81), Expect = 0.042
Identities = 23/103 (22%), Positives = 42/103 (40%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
++HG K + V+ F G + + ++ + ++ ++YIH
Sbjct: 387 SIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQV-IVFDMPSTIKEYIHV 445
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 614
IGR R KGT+ F + DLV+ L+ + I +L
Sbjct: 446 IGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 488
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 36.7 bits (81), Expect = 0.042
Identities = 23/103 (22%), Positives = 42/103 (40%)
Frame = -2
Query: 922 AMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSSEDYIHR 743
++HG K + V+ F G + + ++ + ++ ++YIH
Sbjct: 250 SIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQV-IVFDMPSTIKEYIHV 308
Query: 742 IGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 614
IGR R KGT+ F + DLV+ L+ + I +L
Sbjct: 309 IGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 351
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 36.3 bits (80), Expect = 0.056
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = -2
Query: 754 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEA 638
YIHR+GRT R +G S F TPS + ++ LQEA
Sbjct: 402 YIHRVGRTARFYTQGKSLLFLTPSEEK----MIEKLQEA 436
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 35.5 bits (78), Expect = 0.098
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
Q+ER Y + K ILVATD+ RG+D+E + I
Sbjct: 324 QEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI 359
Score = 32.3 bits (70), Expect = 0.91
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 599
+S++ Y+HR+GR GR KG + F S ++++ +QE ++ +L D
Sbjct: 367 DSADTYLHRVGRAGRFGTKGLAITFVA---SASDSEVLNQVQERFEVDIKELPEQID 420
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 35.5 bits (78), Expect = 0.098
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
Q+ER Y + K ILVATD+ RG+D+E + I
Sbjct: 241 QEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI 276
Score = 32.3 bits (70), Expect = 0.91
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 599
+S++ Y+HR+GR GR KG + F S ++++ +QE ++ +L D
Sbjct: 284 DSADTYLHRVGRAGRFGTKGLAITFVA---SASDSEVLNQVQERFEVDIKELPEQID 337
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 35.5 bits (78), Expect = 0.098
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
Q+ER Y + K ILVATD+ RG+D+E + I
Sbjct: 324 QEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI 359
Score = 32.3 bits (70), Expect = 0.91
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 769 NSSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 599
+S++ Y+HR+GR GR KG + F S ++++ +QE ++ +L D
Sbjct: 367 DSADTYLHRVGRAGRFGTKGLAITFVA---SASDSEVLNQVQERFEVDIKELPEQID 420
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 33.5 bits (73), Expect = 0.39
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -3
Query: 948 RPIWMAXWGPCTVX--KPQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIK 796
R + M W + K Q ER K S I+ ATDVAARGL GI+
Sbjct: 428 RQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLVSSGIR 480
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 33.5 bits (73), Expect = 0.39
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 775 IQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSNS 677
+ +S+E Y+HR GRT R+ A G S A P+ +
Sbjct: 579 LPHSAEVYVHRCGRTARAFADGCSIALIEPNET 611
Score = 29.1 bits (62), Expect = 8.5
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGIK 796
Q+ R + + + IL+ATD+ ARG+D++ ++
Sbjct: 538 QRARLKSIDRFRASENGILIATDLVARGIDIKNVR 572
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 32.7 bits (71), Expect = 0.69
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGI 799
Q R + + + S L+ TDVAARGLD+ GI
Sbjct: 314 QNARDKALASFTKASSGALLCTDVAARGLDIPGI 347
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 32.7 bits (71), Expect = 0.69
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGI 799
Q+ R + S +L+ TDVAARGLD+ GI
Sbjct: 305 QKGRDTALASFTEASSGVLLCTDVAARGLDIPGI 338
Score = 29.1 bits (62), Expect = 8.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 754 YIHRIGRTGRSKAKGTSYAFFTPSNS 677
+IHR+GRT R + +G + F P +
Sbjct: 353 FIHRVGRTARMERQGRAIVFLMPKET 378
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 32.7 bits (71), Expect = 0.69
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGI 799
Q+ R + S +L+ TDVAARGLD+ GI
Sbjct: 278 QKGRDTALASFTEASSGVLLCTDVAARGLDIPGI 311
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 32.3 bits (70), Expect = 0.91
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 754 YIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 659
++HR+GR R+ G +Y+F TP + DL
Sbjct: 355 FVHRVGRAARAGRTGCAYSFVTPEDMPYMLDL 386
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 757 DYIHRIGRTGRSK-AKGTSYAFFTP 686
DYIHR+GRT R + AKG + TP
Sbjct: 483 DYIHRVGRTARGEGAKGKALLVLTP 507
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 31.5 bits (68), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGI 799
Q R + + + + IL+ TDVAARGLD+ +
Sbjct: 370 QNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSV 403
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 31.5 bits (68), Expect = 1.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 757 DYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDL 659
+Y+HR+GRT R KG + F P K+L
Sbjct: 432 EYVHRVGRTARIGEKGEALLFLQPIEIDYLKEL 464
Score = 31.1 bits (67), Expect = 2.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGIK 796
Q++R + K ++L++TDVAARGLD ++
Sbjct: 385 QEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVR 419
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 31.1 bits (67), Expect = 2.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 775 IQNSSEDYIHRIGRTGRSKAKG 710
I +S+DYIHR+GRT R+ G
Sbjct: 337 IPTNSKDYIHRVGRTARAGRSG 358
Score = 29.5 bits (63), Expect = 6.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 921 PCTVXKPQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
P + Q +R K +ILV TDVA+RGLD+ + +
Sbjct: 289 PISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDV 331
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 31.1 bits (67), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 775 IQNSSEDYIHRIGRTGRSKAKGTSYAFFTP 686
+ + E YIHR+GRTGR +G P
Sbjct: 415 LPSDREQYIHRLGRTGRKGKEGEGVLLLAP 444
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 906 KPQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
KPQ R ++ S ILV +DV+ARG+D + +
Sbjct: 372 KPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSL 409
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 31.1 bits (67), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 775 IQNSSEDYIHRIGRTGRSKAKGTSYAFFTP 686
+ + E YIHR+GRTGR +G P
Sbjct: 717 LPSDREQYIHRLGRTGRKGKEGEGVLLLAP 746
Score = 29.1 bits (62), Expect = 8.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 906 KPQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
KPQ R ++ + ILV +DV+ARG+D + +
Sbjct: 674 KPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSL 711
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 900 QQERXEYYXNXKRVGSSILVATDVAARGLDVEGIK 796
Q +R + ++ L+ATDVAARGLD+ G++
Sbjct: 448 QAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQ 482
Score = 30.7 bits (66), Expect = 2.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 760 EDYIHRIGRTGRSKAKGTSYAFFTPSN 680
+ Y+HR+GRT R+ +G + F T S+
Sbjct: 494 DSYVHRVGRTARAGREGYAVTFVTDSD 520
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 760 EDYIHRIGRTGRSKAKGTSYAFFTP 686
E YIHR+GRTGR +G P
Sbjct: 394 EQYIHRLGRTGRKGKEGEGILLLAP 418
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 30.7 bits (66), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 903 PQQERXEYYXNXKRVGSSILVATDVAARGLDVEGIKI 793
PQ +R + + LVAT+VAARGLD+ +++
Sbjct: 381 PQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQL 417
Score = 29.5 bits (63), Expect = 6.4
Identities = 22/88 (25%), Positives = 33/88 (37%)
Frame = -2
Query: 940 MDGXLGAMHGXKTXARKGXVLXQFXEGRFQYTXXXXXXXXXXXXXXXQNM*LILIIQNSS 761
+DG A+HG +++ L F G+F T + +
Sbjct: 370 LDGSR-ALHGEIPQSQREVTLAGFRNGKFA-TLVATNVAARGLDINDVQLIIQCEPPREV 427
Query: 760 EDYIHRIGRTGRSKAKGTSYAFFTPSNS 677
E YIHR GRTGR+ G + + S
Sbjct: 428 EAYIHRSGRTGRAGNTGVAVTLYDSRKS 455
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 30.7 bits (66), Expect = 2.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 775 IQNSSEDYIHRIGRTGRSKAKGTSYAFFTP 686
I + E YIHR+GRTGR G P
Sbjct: 711 IPSDREQYIHRLGRTGREGKGGKGLLLIAP 740
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 30.7 bits (66), Expect = 2.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 775 IQNSSEDYIHRIGRTGRSKAKGTSYAFFTP 686
I + E YIHR+GRTGR G P
Sbjct: 664 IPSDREQYIHRLGRTGREGKGGEGLLLIAP 693
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.5 bits (63), Expect = 6.4
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = -2
Query: 766 SSEDYIHRIGRTGRSKAKGTSYAFFTPSNSRQAKDLVSVLQEA 638
+S DY+HR GRT R AKG T SR+ + L + ++EA
Sbjct: 451 NSIDYLHRTGRTARMGAKGK----VTSLVSRKDQMLAARIEEA 489
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 29.5 bits (63), Expect = 6.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 775 IQNSSEDYIHRIGRTGRSKAKGTSYAFFTPSN 680
I DY+HR+GRT R+ G + + T ++
Sbjct: 379 IPRDPRDYVHRVGRTARAGRGGLAVSIITETD 410
>At2g33320.1 68415.m04084 C2 domain-containing protein low
similarity to splicing coactivator subunit SRm300 [Homo
sapiens] GI:6649242; contains Pfam profile PF00168: C2
domain
Length = 602
Score = 29.1 bits (62), Expect = 8.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 756 ITFIELVGQEDPKLKELHMHSLPHPTPAKLKISSPFYKKLI 634
+ + +L+G+EDP L+ LH++S + SS Y+ ++
Sbjct: 166 VGYRDLLGEEDPNLQNLHLNSFKGSSKNPQSPSSKQYQSVV 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,520,531
Number of Sequences: 28952
Number of extensions: 466664
Number of successful extensions: 937
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4289173440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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