Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_F05_e518_11.seq
(1568 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 145 1e-34
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 2e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 112 8e-25
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 42 0.001
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 42 0.002
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 36 0.067
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.15
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 31 2.5
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 5.8
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 145 bits (351), Expect = 1e-34
Identities = 61/129 (47%), Positives = 93/129 (72%)
Frame = +1
Query: 121 AWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 300
+W LD + ER++G T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL++
Sbjct: 194 SWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVI 253
Query: 301 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 480
+A GEFE G + GQTREHA+LA T GVK L++ VNKMD ++E R+EEIK +++
Sbjct: 254 SARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTP 313
Query: 481 YIKKIGYNP 507
++KK+G+NP
Sbjct: 314 FLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (308), Expect = 2e-29
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +1
Query: 97 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 276
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 69.3 bits (162), Expect = 8e-12
Identities = 44/99 (44%), Positives = 56/99 (56%)
Frame = +2
Query: 626 VNALLRPSTPSFRLLAPLTRLSVFPCKDVYKIGGIGTVPRG*S*NWYPKPGTVVVXAPAN 805
++++L PS PS PL RL P +DVYKIGGIGTVP G KPGTVV +P+N
Sbjct: 91 LDSILPPSRPSG---LPL-RL---PLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSN 143
Query: 806 XLLKSSPXKXPTRXLQEAXPGDNVGXNXQKRXCKELPRG 922
+ + L EA PGDNVG N + K++ RG
Sbjct: 144 ITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRG 182
Score = 68.5 bits (160), Expect = 1e-11
Identities = 50/142 (35%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Frame = +1
Query: 550 NMLEPSTKMPWFKGWLVER------KEGKAEGKCLIEALDAILPPARPTDKALRLPLQGR 711
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ LRLPLQ
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQD- 111
Query: 712 IQNRRYWNSTPWVELKL-VS*AWYCCRFXPC*HXTEVKSXEXXHEXSTRSXXR*QCWFXX 888
+ + P ++ V F P TEVKS E HE + F
Sbjct: 112 VYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNV 171
Query: 889 SKTFX*GIAPGYVXGDSKTXHP 954
I G V GD K P
Sbjct: 172 KNVSVKDIKRGNVAGDFKNNPP 193
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 112 bits (269), Expect = 8e-25
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +1
Query: 169 IDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 348
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 349 TREHALLAFTLGVKQLIVGVNKMD 420
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 42.3 bits (95), Expect = 0.001
Identities = 30/117 (25%), Positives = 52/117 (44%)
Frame = +1
Query: 136 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 315
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 316 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 486
QT EH + +K +++ NK+D + ++ ++++I K V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +1
Query: 133 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 312
D ++ ER+RGI++ ++ F + I+D PGH+DF ++ + D ++++
Sbjct: 55 DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114
Query: 313 G 315
G
Sbjct: 115 G 115
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 36.3 bits (80), Expect = 0.067
Identities = 25/87 (28%), Positives = 36/87 (41%)
Frame = +1
Query: 160 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 339
GIT I + + G + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 340 NGQTREHALLAFTLGVKQLIVGVNKMD 420
QT+E A GV +I +NK+D
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKID 201
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 35.1 bits (77), Expect = 0.15
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 160 GITIDIA--LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 333
GIT I L K +G+ +T ID PGH F G + D VL+VAA G
Sbjct: 60 GITQHIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----K 114
Query: 334 SKNGQTREHALLAFTLGVKQLIVGVNKMD 420
++ ++ HA+ A LIV +NK+D
Sbjct: 115 TQTVESIRHAMHAKV----PLIVAINKID 139
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 31.1 bits (67), Expect = 2.5
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Frame = +1
Query: 133 DKLKAERERGITIDIALWKFET---------GKYY----VTIIDAPGHRDFIKNMITGTS 273
DK +ERGIT+D+ F+ G + +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122
Query: 274 QADCAVLIVAAGTGEFEAGISKNGQTR 354
A +I GT E G ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 5.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 217 IIDAPGHRDFIKNMITGTSQADCAVLIV 300
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,544,557
Number of Sequences: 59808
Number of extensions: 814022
Number of successful extensions: 1982
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5129408549
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -