Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F04_e510_12.seq
         (1507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    29   1.3  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   6.7  

>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 685 KSLYAVQLYLALLFCNCDNKFRIPPTYVTKIKSKNHQQTRLTHTFNFYSEYI 840
           +  Y+V+ +L LL   C  K+   P  +T I+  NH+  ++T  + FY E +
Sbjct: 85  RGFYSVETFLLLLTLKC--KY---PKEMTLIRG-NHESRQITQVYGFYDECV 130


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 517 RLNSPLTQKNHNKFHLQNFIQKTQSPVSCDAIFFNSYG*R 636
           R NSP T K ++ F+ Q  +        C+ IFF   G R
Sbjct: 213 RSNSPFTGKPYSSFYQQGDVIGVGYKPKCNRIFFTRNGRR 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,111,270
Number of Sequences: 5004
Number of extensions: 73747
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 842423950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)