Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F04_e510_12.seq
         (1507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0217 + 21629666-21629921,21630691-21630878,21630979-216310...    31   2.4  
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790...    31   2.4  
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820     30   5.5  
09_04_0085 + 14441123-14443507,14443731-14443787                       29   7.2  
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651           29   7.2  
06_03_1248 + 28685911-28687719                                         29   9.6  
04_04_0438 - 25200419-25200670,25202570-25202917,25203529-252036...    29   9.6  

>09_06_0217 +
           21629666-21629921,21630691-21630878,21630979-21631042,
           21631150-21631232,21631627-21631710,21631811-21631963,
           21632150-21632335,21632596-21632663,21632896-21632992
          Length = 392

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +3

Query: 252 ATEIIGELPARDKS--PSEVETT--QEKIISLELTTSPNNEATRVDIEDAGISLGEGEAE 419
           A + +    A++K   P EVET   QE    LE     N   TR+ +++  + LG G+ +
Sbjct: 258 AMKFVDRFLAKEKLALPVEVETRTLQEVKDLLEYAAENNTSLTRIMLDNMVVPLGNGDID 317

Query: 420 VGEHSLQPDIVQVVN 464
           V   S+  D V+++N
Sbjct: 318 V---SMLKDAVELIN 329


>07_03_0358 -
           17177253-17177369,17177635-17177931,17178961-17179032,
           17179117-17179383,17179752-17179910,17180194-17180295,
           17180696-17180767,17181105-17181200,17181710-17181871,
           17181941-17182021,17182837-17183094,17183173-17183275,
           17183412-17183542,17184827-17184919,17184999-17185099,
           17186271-17186355,17186487-17186701,17186779-17186842,
           17187128-17187214,17188922-17189022,17190206-17190397,
           17190533-17190599,17191211-17191351
          Length = 1020

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 261 IIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIEDAGISLGEGEAEVGEHSLQ 440
           I+  L A      +VE  Q+K +  +  T   N A+R+D  +    +G G+  V +H LQ
Sbjct: 85  ILNALGAFHTFLGKVERAQQKEVHFKEATQCYNRASRIDETEPSTWIGRGQLCVVKHDLQ 144


>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
          Length = 357

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 25/114 (21%), Positives = 47/114 (41%)
 Frame = +3

Query: 255 TEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIEDAGISLGEGEAEVGEHS 434
           ++I  +LP R  + +E++      +  +L     + AT   + D G   GE   + G+  
Sbjct: 93  SQIAAQLPGR--TDNEIKNFWNSCLKKKLRQRGIDPATHKPLNDGGAGAGEEHHDDGDKQ 150

Query: 435 LQPDIVQVVNPLLDGGAGHVTAIPVGPAVKLTAYTEKSQ*IPFTKLHTKNTISG 596
              D V     +  GG+    A P  PAV     +  +  +P T + + ++  G
Sbjct: 151 QLMDDVDDCFAIGGGGSSDSLAPPHSPAVSFDPLSVTN--VPTTMMQSSSSPYG 202


>09_04_0085 + 14441123-14443507,14443731-14443787
          Length = 813

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 560 IYKTSYKKHNLRSLVTRFFLTRTASVSDFVHIKKKRTVL 676
           IYK   + HN      R+FL R+ + + F+H + K+T L
Sbjct: 762 IYKHQNRNHNNIRTKKRYFLRRSDNRAPFLHKRNKQTKL 800


>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
          Length = 642

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 560 IYKTSYKKHNLRSLVTRFFLTRTASVSDFVHIKKKRTVL 676
           IYK   + HN      R+FL R+ + + F+H + K+T L
Sbjct: 591 IYKHQNRNHNNIRTKKRYFLRRSDNRAPFLHKRNKQTKL 629


>06_03_1248 + 28685911-28687719
          Length = 602

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +3

Query: 204 QEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIE 383
           +E  E  +V+K  V P+       P  ++   +VET Q    S E  T+   E  R D+E
Sbjct: 445 EEQEELSEVVKMAVEPSISSEPATPLEEEDRDDVETEQAN--SSEPATTVEEEEDRDDVE 502

Query: 384 DAGISLGEGEAEVGEHSLQPD 446
               S  +    + E ++  +
Sbjct: 503 TEQASSSDPATPLNEEAINEE 523


>04_04_0438 -
           25200419-25200670,25202570-25202917,25203529-25203600,
           25203996-25204025
          Length = 233

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 357 CSGWSLTPMILSSLVSFPPRMEIYLSP 277
           C GW L P++L ++ ++  +  IY++P
Sbjct: 179 CCGWQLKPVVLINVDAYIDKAHIYITP 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,180,183
Number of Sequences: 37544
Number of extensions: 477620
Number of successful extensions: 1117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4826476928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)