Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F04_e510_12.seq
         (1507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)                     30   4.2  
SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)                    29   7.3  
SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)              29   7.3  
SB_28799| Best HMM Match : SEC-C (HMM E-Value=0.95)                    29   7.3  
SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1)             29   7.3  
SB_57306| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_54397| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  

>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 532

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +1

Query: 541 KNHNKFHLQNFIQ-KTQSPVSCDAIFFNSYG*RFRFRPYXXXXN-SFSRHKSLYAVQLYL 714
           +N NK +  ++ + K   P S  AI F     RFRFRPY      SFS   +L  V  + 
Sbjct: 375 ENDNKLYSASYSRAKWTGPESYHAIVFE----RFRFRPYPRLERVSFSNCSTLEVV--FK 428

Query: 715 ALLFCNCDNKFRIPPTYVTKIKSKNHQQTR-LTHTFNFY 828
              F +  ++FR+  T +   K   H     LT   N Y
Sbjct: 429 LFRFRSSFSRFRVDDTRIRIKKHFAHNNPPVLTPATNLY 467


>SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)
          Length = 1037

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 285 DKSPSEVETTQEKIISLELTTSPNNEATRVDIEDAGISLGEGEAEVGEHS 434
           +K  S +E ++E I+S +  TS N E    DIE    SLG+ + E    S
Sbjct: 628 EKMISRIEESREAILSRD-NTSQNLEVLECDIEKLAASLGKFKEEASLQS 676


>SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)
          Length = 781

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 285 DKSPSEVETTQEKIISLELTTSPNNEATRVDIEDAGISLGEGEAEVGEHS 434
           +K  S +E ++E I+S +  TS N E    DIE    SLG+ + E    S
Sbjct: 192 EKMISRIEESREAILSRD-NTSQNLEVLECDIEKLAASLGKFKEEASLQS 240


>SB_28799| Best HMM Match : SEC-C (HMM E-Value=0.95)
          Length = 710

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 285 DKSPSEVETTQEKIISLELTTSPNNEATRVDIEDAGISLGEGEAEVGEHS 434
           +K  S +E ++E I+S +  TS N E    DIE    SLG+ + E    S
Sbjct: 639 EKMISRIEESREAILSRD-NTSQNLEVLECDIEKLAASLGKFKEEASLQS 687


>SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1)
          Length = 633

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 539 RKITINSIYKTSYKKHNLRSLVTRFFLTRTASVSDFVHIKKKRTVLVVIKACTRYNSISL 718
           RK   +S+   + +K+N  SL+TR F     S      ++K  T  ++ +   +YN+ SL
Sbjct: 236 RKHNTSSLLTRTLRKYNTSSLLTRTFRKHNTSSLLTRTMRKHNTSSLLTRTLRKYNTSSL 295


>SB_57306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 539 RKITINSIYKTSYKKHNLRSLVTRFFLTRTASVSDFVHIKKKRTVLVVIKACTRYNSISL 718
           RK   +S+   + +K+N RSL+TR       S      ++K  T  ++ +   +YN+ SL
Sbjct: 81  RKYNTSSLLTRTLRKYNTRSLLTRTLRKYNTSSLLTRTLRKYNTSSLLTRTLRKYNTSSL 140


>SB_54397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 285 DKSPSEVETTQEKIISLELTTSPNNEATRVDIEDAGISLGEGEAEVGEHS 434
           +K  S +E ++E I+S +  TS N E    DIE    SLG+ + E    S
Sbjct: 208 EKMISRIEESREAILSRD-NTSQNLEVLECDIEKLAASLGKFKEEASLQS 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,764,971
Number of Sequences: 59808
Number of extensions: 513764
Number of successful extensions: 1170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4882915232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)