Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_F04_e510_12.seq
(1507 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK056288-1|BAB71139.1| 784|Homo sapiens protein ( Homo sapiens ... 35 0.89
X95072-1|CAA64468.1| 522|Homo sapiens Translin Associated Zinc ... 33 2.7
BC036677-1|AAH36677.2| 531|Homo sapiens zinc finger protein 238... 33 2.7
AL590483-1|CAH71954.1| 522|Homo sapiens zinc finger protein 238... 33 2.7
AJ223321-1|CAA11262.1| 522|Homo sapiens RP58 protein protein. 33 2.7
AJ001388-1|CAA04718.1| 522|Homo sapiens RP58 protein. 33 2.7
AJ491324-1|CAD36957.1| 2464|Homo sapiens retinitis pigmentosa 1-... 33 3.6
AY168346-1|AAN86964.1| 2480|Homo sapiens retinitis pigmentosa 1-... 32 4.8
AY168345-1|AAN86963.1| 2464|Homo sapiens retinitis pigmentosa 1-... 32 4.8
AY168344-1|AAN86962.1| 2448|Homo sapiens retinitis pigmentosa 1-... 32 4.8
AY168343-1|AAN86961.1| 2432|Homo sapiens retinitis pigmentosa 1-... 32 4.8
AY168342-1|AAN86960.1| 2416|Homo sapiens retinitis pigmentosa 1-... 32 4.8
AY168341-1|AAN86959.1| 2400|Homo sapiens retinitis pigmentosa 1-... 32 4.8
>AK056288-1|BAB71139.1| 784|Homo sapiens protein ( Homo sapiens
cDNA FLJ31726 fis, clone NT2RI2006735, weakly similar to
Neofelis nebulosa strain nnex zinc finger protein Zfx
gene. ).
Length = 784
Score = 34.7 bits (76), Expect = 0.89
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 231 IKSMVGPATEIIGEL-PARDKSPSEVETTQEKIISLELTTSPNNEATRVD 377
I G ++E++ E+ P+R+ EVE +E + SL L +P N++ ++D
Sbjct: 334 ISKQSGSSSELLVEMMPSRNTLSQEVEIVEEHVTSLGLAQNPENQSRKLD 383
>X95072-1|CAA64468.1| 522|Homo sapiens Translin Associated Zinc
Finger protein-1 protein.
Length = 522
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 201 EQEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDI 380
E++A ++S+ ++ I G+LP+ D+ E E +L P N R+
Sbjct: 131 EEDASSCSDKVESLSDGSSHIAGDLPS-DEDEGEDEKLNILPSKRDLAAEPGNMWMRLPS 189
Query: 381 EDAGISLGEGEAE 419
+ AGI GEAE
Sbjct: 190 DSAGIPQAGGEAE 202
>BC036677-1|AAH36677.2| 531|Homo sapiens zinc finger protein 238
protein.
Length = 531
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 201 EQEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDI 380
E++A ++S+ ++ I G+LP+ D+ E E +L P N R+
Sbjct: 140 EEDASSCSDKVESLSDGSSHIAGDLPS-DEDEGEDEKLNILPSKRDLAAEPGNMWMRLPS 198
Query: 381 EDAGISLGEGEAE 419
+ AGI GEAE
Sbjct: 199 DSAGIPQAGGEAE 211
>AL590483-1|CAH71954.1| 522|Homo sapiens zinc finger protein 238
protein.
Length = 522
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 201 EQEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDI 380
E++A ++S+ ++ I G+LP+ D+ E E +L P N R+
Sbjct: 131 EEDASSCSDKVESLSDGSSHIAGDLPS-DEDEGEDEKLNILPSKRDLAAEPGNMWMRLPS 189
Query: 381 EDAGISLGEGEAE 419
+ AGI GEAE
Sbjct: 190 DSAGIPQAGGEAE 202
>AJ223321-1|CAA11262.1| 522|Homo sapiens RP58 protein protein.
Length = 522
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 201 EQEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDI 380
E++A ++S+ ++ I G+LP+ D+ E E +L P N R+
Sbjct: 131 EEDASSCSDKVESLSDGSSHIAGDLPS-DEDEGEDEKLNILPSKRDLAAEPGNMWMRLPS 189
Query: 381 EDAGISLGEGEAE 419
+ AGI GEAE
Sbjct: 190 DSAGIPQAGGEAE 202
>AJ001388-1|CAA04718.1| 522|Homo sapiens RP58 protein.
Length = 522
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 201 EQEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDI 380
E++A ++S+ ++ I G+LP+ D+ E E +L P N R+
Sbjct: 131 EEDASSCSDKVESLSDGSSHIAGDLPS-DEDEGEDEKLNILPSKRDLAAEPGNMWMRLPS 189
Query: 381 EDAGISLGEGEAE 419
+ AGI GEAE
Sbjct: 190 DSAGIPQAGGEAE 202
>AJ491324-1|CAD36957.1| 2464|Homo sapiens retinitis pigmentosa 1-like
protein 1 protein.
Length = 2464
Score = 32.7 bits (71), Expect = 3.6
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +3
Query: 204 QEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIE 383
QEA E+ + + P +E+I A +++ E E + + +E T EA + + E
Sbjct: 2005 QEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVE-TQEAEGEA-QPESE 2062
Query: 384 DAGISLGEGEAEVGEHSLQPD 446
D EGE + E QP+
Sbjct: 2063 DVEAPEAEGEMQEAEEEAQPE 2083
>AY168346-1|AAN86964.1| 2480|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2480
Score = 32.3 bits (70), Expect = 4.8
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 204 QEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIE 383
QEA E + + P +E+I A +++ E E + + +E T EA + + E
Sbjct: 2021 QEAEEEAQEAEGQAQPESEVIESQEAEEEAQPESEDVEALEVEVE-TQEAEGEA-QPESE 2078
Query: 384 DAGISLGEGEAEVGEHSLQPD 446
D EGE + E QP+
Sbjct: 2079 DVEAPEAEGEMQEAEEEAQPE 2099
>AY168345-1|AAN86963.1| 2464|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2464
Score = 32.3 bits (70), Expect = 4.8
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 204 QEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIE 383
QEA E + + P +E+I A +++ E E + + +E T EA + + E
Sbjct: 2005 QEAEEEAQEAEGQAQPESEVIESQEAEEEAQPESEDVEALEVEVE-TQEAEGEA-QPESE 2062
Query: 384 DAGISLGEGEAEVGEHSLQPD 446
D EGE + E QP+
Sbjct: 2063 DVEAPEAEGEMQEAEEEAQPE 2083
>AY168344-1|AAN86962.1| 2448|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2448
Score = 32.3 bits (70), Expect = 4.8
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 204 QEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIE 383
QEA E + + P +E+I A +++ E E + + +E T EA + + E
Sbjct: 1989 QEAEEEAQEAEGQAQPESEVIESQEAEEEAQPESEDVEALEVEVE-TQEAEGEA-QPESE 2046
Query: 384 DAGISLGEGEAEVGEHSLQPD 446
D EGE + E QP+
Sbjct: 2047 DVEAPEAEGEMQEAEEEAQPE 2067
>AY168343-1|AAN86961.1| 2432|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2432
Score = 32.3 bits (70), Expect = 4.8
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 204 QEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIE 383
QEA E + + P +E+I A +++ E E + + +E T EA + + E
Sbjct: 1973 QEAEEEAQEAEGQAQPESEVIESQEAEEEAQPESEDVEALEVEVE-TQEAEGEA-QPESE 2030
Query: 384 DAGISLGEGEAEVGEHSLQPD 446
D EGE + E QP+
Sbjct: 2031 DVEAPEAEGEMQEAEEEAQPE 2051
>AY168342-1|AAN86960.1| 2416|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2416
Score = 32.3 bits (70), Expect = 4.8
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 204 QEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIE 383
QEA E + + P +E+I A +++ E E + + +E T EA + + E
Sbjct: 1957 QEAEEEAQEAEGQAQPESEVIESQEAEEEAQPESEDVEALEVEVE-TQEAEGEA-QPESE 2014
Query: 384 DAGISLGEGEAEVGEHSLQPD 446
D EGE + E QP+
Sbjct: 2015 DVEAPEAEGEMQEAEEEAQPE 2035
>AY168341-1|AAN86959.1| 2400|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2400
Score = 32.3 bits (70), Expect = 4.8
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 204 QEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRVDIE 383
QEA E + + P +E+I A +++ E E + + +E T EA + + E
Sbjct: 1941 QEAEEEAQEAEGQAQPESEVIESQEAEEEAQPESEDVEALEVEVE-TQEAEGEA-QPESE 1998
Query: 384 DAGISLGEGEAEVGEHSLQPD 446
D EGE + E QP+
Sbjct: 1999 DVEAPEAEGEMQEAEEEAQPE 2019
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,341,323
Number of Sequences: 237096
Number of extensions: 2662966
Number of successful extensions: 9776
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9776
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22362126672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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