Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F04_e510_12.seq
         (1507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00050-2|AAL02479.1|  582|Caenorhabditis elegans Hypothetical pr...    31   2.1  
U00050-1|AAA50697.1|  583|Caenorhabditis elegans Hypothetical pr...    31   2.1  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    29   8.6  

>U00050-2|AAL02479.1|  582|Caenorhabditis elegans Hypothetical
           protein F09F7.5b protein.
          Length = 582

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +3

Query: 201 EQEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRV 374
           E+E +E +   ++++G   +++G+    D+    VE T++KI    +   P + A  +
Sbjct: 508 EEENVEEEIKGENVIGEEFQVVGDTKINDEQEDRVEATKDKINDAFIMLPPPSAAAMI 565


>U00050-1|AAA50697.1|  583|Caenorhabditis elegans Hypothetical
           protein F09F7.5a protein.
          Length = 583

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +3

Query: 201 EQEAIESQKVIKSMVGPATEIIGELPARDKSPSEVETTQEKIISLELTTSPNNEATRV 374
           E+E +E +   ++++G   +++G+    D+    VE T++KI    +   P + A  +
Sbjct: 509 EEENVEEEIKGENVIGEEFQVVGDTKINDEQEDRVEATKDKINDAFIMLPPPSAAAMI 566


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 626 TASVSDFVHIKKKRTVLVVIKACTRYNSISLCYFV 730
           TA +SDF+ I +K +VL  I A  +  S  +C F+
Sbjct: 3   TAELSDFLEINEKESVLRGISASDKILSSGICQFL 37


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = -1

Query: 532 AVSLTAGPTGMAVT*PAPPSRSGFTT*TISG*RECSPTSASPSPKLIPASSISTR 368
           AV   + P  +    PA P+R   T       R   P  A+  PK  PAS   TR
Sbjct: 315 AVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPASKAPTR 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,731,476
Number of Sequences: 27780
Number of extensions: 417416
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4339584726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)