Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F04_e510_12.seq
         (1507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    29   0.14 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   9.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   9.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +3

Query: 228 VIKSMVGPATEIIGELPARDKSPSEVETTQE---KIISLELTTSPNNEATRVDIEDAGIS 398
           +I+ +VG   ++IG  P  DK  + VE  +    K++ L+   S  N+  +V IE    +
Sbjct: 23  LIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKV-IEWVEKN 81

Query: 399 LGEGEAEVGEHSLQPDIVQVVNPLLD 476
           LG  +  +   ++  D+    + +LD
Sbjct: 82  LGAIDILINNATINIDVTLQNDEVLD 107


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 420 VGEHSLQPDIVQVVN 464
           VG  SL+PD VQ+VN
Sbjct: 230 VGGASLKPDFVQIVN 244


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 394 IPASSISTRVASLFGLVVNSNDI-IFSCVVSTSDGDLSLAGSSPIISVAGPTILLITFCD 218
           +P +   + +  L G  +N  D  ++ C+V  S+GD + A +   +  A P +LL +F +
Sbjct: 374 LPGTGRQSELLRLNG--INREDRGMYQCIVRRSEGDTAQASAELQLGNA-PPMLLYSFIE 430


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 394 IPASSISTRVASLFGLVVNSNDI-IFSCVVSTSDGDLSLAGSSPIISVAGPTILLITFCD 218
           +P +   + +  L G  +N  D  ++ C+V  S+GD + A +   +  A P +LL +F +
Sbjct: 374 LPGTGRQSELLRLNG--INREDRGMYQCIVRRSEGDTAQASAELQLGNA-PPMLLYSFIE 430


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 369 VWLHCSGWSLTPM 331
           +WL   GW++ PM
Sbjct: 175 IWLFSLGWTIAPM 187


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 369 VWLHCSGWSLTPM 331
           +WL   GW++ PM
Sbjct: 51  IWLFSLGWTIAPM 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,102
Number of Sequences: 438
Number of extensions: 5606
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52635000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)