Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F03_e502_11.seq
         (1559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   255   6e-68
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   253   2e-67
02_01_0295 - 1973115-1973404,1974138-1974663                           31   1.9  
11_04_0329 - 16442298-16443734                                         29   7.5  
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78...    29   10.0 

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  255 bits (625), Expect = 6e-68
 Identities = 132/241 (54%), Positives = 161/241 (66%), Gaps = 4/241 (1%)
 Frame = +1

Query: 85  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 264
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 265 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 438
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 439 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 612
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV   +R    K GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 613 APKIQRLVTPVVXXXXXXXXXXXXXXXXXXXXXXXITLNLLAQRKKESKVRRQEXIKRRR 792
           APKIQRLVTP+                            LLAQR KE + RR E + +RR
Sbjct: 177 APKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRR 236

Query: 793 S 795
           S
Sbjct: 237 S 237


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  253 bits (620), Expect = 2e-67
 Identities = 131/241 (54%), Positives = 160/241 (66%), Gaps = 4/241 (1%)
 Frame = +1

Query: 85  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 264
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 265 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 438
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 439 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 612
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV   +R    K GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 613 APKIQRLVTPVVXXXXXXXXXXXXXXXXXXXXXXXITLNLLAQRKKESKVRRQEXIKRRR 792
           APKIQRLVTP+                            LLAQR KE + RR E + +RR
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRR 236

Query: 793 S 795
           S
Sbjct: 237 S 237


>02_01_0295 - 1973115-1973404,1974138-1974663
          Length = 271

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +1

Query: 322 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKR 495
           G S  +  + G ++    RG +   + S  AL  +  GA   PG      ++P R+G  +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224

Query: 496 ASKIRKLFNLKKEDDVRRYVVKRLLPAKEG 585
            +KIRKL  +K ++D++  ++K  +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -1

Query: 509 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 339
           R+L A       G    +   + CAP   M       LAS+  P + LRF S  RRG
Sbjct: 56  RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112


>03_01_0099 +
           778521-778736,779521-779775,779831-779924,780064-780116,
           780301-780339,781091-781159,781275-781445,781533-781598,
           782533-782601,782993-783060,783308-783430,784095-784228,
           784412-784506,784600-784644,784755-784814,785548-785599,
           785674-785714,785857-785921,786704-786755,787021-787092
          Length = 612

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 487 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 356
           D+D   ++    + F  +  GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,152,232
Number of Sequences: 37544
Number of extensions: 574807
Number of successful extensions: 1119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5035314872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)