Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F02_e494_12.seq
         (1578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0158 - 1103461-1104186                                           73   5e-13
08_01_0202 - 1638978-1639571                                           72   1e-12
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380...    34   0.36 
09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751     30   5.8  
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    30   5.8  
12_01_0346 + 2652181-2653566                                           29   7.6  
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142     29   7.6  

>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 73.3 bits (172), Expect = 5e-13
 Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
 Frame = +3

Query: 261 AEKVSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 440
           A +  GTVKWFN   G+GFI+ +D  ED+FVHQ++I         RS+ +GE VEFA+  
Sbjct: 4   AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEQVEFAISE 59

Query: 441 GEKG-YEAARVTGPGGESVKG 500
            E G  +A  VTGP G  VKG
Sbjct: 60  SEDGRTKAVDVTGPDGSFVKG 80


>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
 Frame = +3

Query: 261 AEKVSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 440
           +E+V GTVKWF+   G+GFI  +D  ED+FVHQ+++         RS+ DG+ VEF+V +
Sbjct: 3   SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVGS 58

Query: 441 GEKG-YEAARVTGPGGESVKG 500
           G  G  +A  VT PGG ++ G
Sbjct: 59  GNDGRTKAVDVTAPGGGALTG 79


>04_03_0655 +
           18436363-18436901,18436984-18437772,18437952-18438028,
           18438034-18438248
          Length = 539

 Score = 33.9 bits (74), Expect = 0.36
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +1

Query: 382 LARLCVR*ATERRWSLPWLPGRKAMKQPELLVPAVNPS-RVHLMQLTNAAATIVNTTHVK 558
           +A L VR     RW LPW    +      LLV  V P+  V   +L   AA  + + HV 
Sbjct: 334 MASLVVRFTGPERWILPWRVSTRLRSLRRLLVADVPPTWDVSWPRLLLQAAPSLESLHVH 393

Query: 559 VGDVVVKEPHAXVVSGAVDLHP 624
           V      +P A    G   + P
Sbjct: 394 VAATADDQPAAAAAPGREIMWP 415


>09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751
          Length = 575

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 24/76 (31%), Positives = 30/76 (39%)
 Frame = +1

Query: 463 PELLVPAVNPSRVHLMQLTNAAATIVNTTHVKVGDVVVKEPHAXVVSGAVDLHPIQGGAQ 642
           P  LVPA    + H     NAA   V   H  +G    +EP      G ++ +P Q GA 
Sbjct: 416 PRPLVPAY--PQPHFPSQVNAAHRQVPPEHYPLGIAHGQEPGFLDNFGGIERYPYQRGAI 473

Query: 643 GDEGHEQSAPPPXRXI 690
           G        P P R I
Sbjct: 474 GTVIGMPGTPSPMRGI 489


>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 381  GCFGLSQFDVQTHLLWCHS 325
            GC+GL QF ++  LL CHS
Sbjct: 1107 GCYGLPQFRMRVFLLGCHS 1125


>12_01_0346 + 2652181-2653566
          Length = 461

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 529 ATIVNTTHVKVGDVVVKEPHAXVVSGAVDL-HPIQGG--AQGDEGHEQSAPPPXR 684
           AT+  T  +  G VVV EP   VV G   L HP++ G    G  G  Q   P  R
Sbjct: 402 ATVKATASIGGGAVVVVEPEEAVVHGGGLLSHPMEDGYHCMGAGGRRQIGSPMDR 456


>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
          Length = 751

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 282 VKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 461
           V W+    G          + ++    A +  NPR+A  +  D +  E AVV G   YE+
Sbjct: 439 VFWWGDDEGESSAAARRWLDALYAAMEAAVSGNPREAFVNYRDLDIGENAVVGGVTEYES 498

Query: 462 AR 467
           AR
Sbjct: 499 AR 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,513,906
Number of Sequences: 37544
Number of extensions: 348225
Number of successful extensions: 984
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5104927520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)