Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F02_e494_12.seq
         (1578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   54   2e-07
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.001

>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +3

Query: 258 IAEKVSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 437
           ++ + +GTVKWFN + GYGFI    + +D+FVH  AI         +S+ +G+AV F   
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLFVHFKAI----QSDGFKSLKEGQAVTFVAT 66

Query: 438 AGEKGYEAARV 470
            G+KG +A  V
Sbjct: 67  RGQKGMQAEEV 77


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +3

Query: 447 KGYEAARVTGPGGESVKGSPYAADKRRSYHRQYY 548
           +G EA+ VTGP GE V+GS YA D+RR  +R  Y
Sbjct: 13  QGLEASNVTGPDGEPVQGSKYAPDRRRRNNRYDY 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,613,995
Number of Sequences: 59808
Number of extensions: 345379
Number of successful extensions: 774
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5164621880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)