Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F02_e494_12.seq
         (1578 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p pro...   160   6e-39
AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA...   160   6e-39
U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein ...   153   5e-37
AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p pro...    64   7e-10
AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding ...    64   7e-10
AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA...    64   7e-10
AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p pro...    33   1.1  
AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB...    33   1.1  
AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA...    33   1.1  
AE013599-3457|AAF46894.2| 1227|Drosophila melanogaster CG30268-P...    30   7.6  

>AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p
           protein.
          Length = 352

 Score =  160 bits (388), Expect = 6e-39
 Identities = 74/93 (79%), Positives = 82/93 (88%)
 Frame = +3

Query: 255 VIAEKVSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 434
           VIA KV+GTVKWFN KSGYGFINRNDT+EDVFVHQ+AI RNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 435 VAGEKGYEAARVTGPGGESVKGSPYAADKRRSY 533
           V GEKG EAA VTGP GE V+GS +AADKRR++
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA
           protein.
          Length = 352

 Score =  160 bits (388), Expect = 6e-39
 Identities = 74/93 (79%), Positives = 82/93 (88%)
 Frame = +3

Query: 255 VIAEKVSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 434
           VIA KV+GTVKWFN KSGYGFINRNDT+EDVFVHQ+AI RNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 435 VAGEKGYEAARVTGPGGESVKGSPYAADKRRSY 533
           V GEKG EAA VTGP GE V+GS +AADKRR++
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein
           protein.
          Length = 359

 Score =  153 bits (372), Expect = 5e-37
 Identities = 73/93 (78%), Positives = 81/93 (87%)
 Frame = +3

Query: 255 VIAEKVSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 434
           VIA KV+GTVKWFN KSGYGFINRNDT+EDVFVHQ+AI  NNP+KAVRSVGDGE VEF V
Sbjct: 58  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDV 116

Query: 435 VAGEKGYEAARVTGPGGESVKGSPYAADKRRSY 533
           V GEKG EAA VTGP GE V+GS +AADKRR++
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p
           protein.
          Length = 195

 Score = 63.7 bits (148), Expect = 7e-10
 Identities = 33/78 (42%), Positives = 43/78 (55%)
 Frame = +3

Query: 276 GTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 455
           G  KWFN   G+GF+  ND  ++VFVHQ+ I         RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96

Query: 456 EAARVTGPGGESVKGSPY 509
           EA RV+   G S +GS Y
Sbjct: 97  EATRVSSRHGGSCQGSTY 114


>AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding
           protein LIN-28 protein.
          Length = 195

 Score = 63.7 bits (148), Expect = 7e-10
 Identities = 33/78 (42%), Positives = 43/78 (55%)
 Frame = +3

Query: 276 GTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 455
           G  KWFN   G+GF+  ND  ++VFVHQ+ I         RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96

Query: 456 EAARVTGPGGESVKGSPY 509
           EA RV+   G S +GS Y
Sbjct: 97  EATRVSSRHGGSCQGSTY 114


>AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA
           protein.
          Length = 195

 Score = 63.7 bits (148), Expect = 7e-10
 Identities = 33/78 (42%), Positives = 43/78 (55%)
 Frame = +3

Query: 276 GTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 455
           G  KWFN   G+GF+  ND  ++VFVHQ+ I         RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96

Query: 456 EAARVTGPGGESVKGSPY 509
           EA RV+   G S +GS Y
Sbjct: 97  EATRVSSRHGGSCQGSTY 114


>AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p
           protein.
          Length = 143

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 270 VSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAI 368
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB,
           isoform B protein.
          Length = 143

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 270 VSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAI 368
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA,
           isoform A protein.
          Length = 143

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 270 VSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAI 368
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE013599-3457|AAF46894.2| 1227|Drosophila melanogaster CG30268-PA
           protein.
          Length = 1227

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 371 DYRSLMYKHIFFGV-IPIDETISTLXVEPFDSTRNLFS 261
           +YR L Y H F G+ +P D   + + +EP    +NLF+
Sbjct: 599 NYRELYYIHFFSGISLPNDLMYNMMPIEPRRMKKNLFN 636


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,336,058
Number of Sequences: 53049
Number of extensions: 515093
Number of successful extensions: 1532
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 24,988,368
effective HSP length: 88
effective length of database: 20,320,056
effective search space used: 8879864472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)