Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F02_e494_12.seq
         (1578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...   131   2e-30
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    86   6e-17
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    83   4e-16
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    83   4e-16
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    83   5e-16
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    54   2e-07
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    54   2e-07
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       54   2e-07
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       54   2e-07

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/89 (68%), Positives = 68/89 (76%)
 Frame = +3

Query: 255 VIAEKVSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 434
           V A KV GTVKWFN K+GYGFINR DT ED+FVHQTAII NNP K +RS+GD E V F +
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75

Query: 435 VAGEKGYEAARVTGPGGESVKGSPYAADK 521
           V G KG EAA VTGP G  V+GS YAAD+
Sbjct: 76  VEGSKGLEAASVTGPDGGPVQGSKYAADR 104


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 86.2 bits (204), Expect = 6e-17
 Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
 Frame = +3

Query: 258 IAEKVSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFAV 434
           I   + G VKW++    YGFI+RND ++D+FVHQTAI ++   K  +R++GD E V F +
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121

Query: 435 VAGEKGYEAARVTGPGGESVKGSPY 509
           V G+ G EAA VTGP G++V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = +3

Query: 255 VIAEKVSGTVKWFNXKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 422
           VI   V G VKWF+ +  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 423 EFAVVAGEKGYEAARVTGPGGESVKGSPYA 512
            F +V G KG EAA VTGP GE+V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = +3

Query: 255 VIAEKVSGTVKWFNXKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 422
           VI   V G VKWF+ +  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 423 EFAVVAGEKGYEAARVTGPGGESVKGSPYA 512
            F +V G KG EAA VTGP GE+V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 83.0 bits (196), Expect = 5e-16
 Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 VIAEKVSGTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFA 431
           V+   + G VKW++    YGFI+R+D ++DVFVHQTAI +++  K  +R++ D E V F 
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118

Query: 432 VVAGEKGYEAARVTGPGGESVKGSPY 509
           +V G+ G EAA VTGP G +V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +3

Query: 276 GTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 449
           G+ KWFN   GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 24  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79

Query: 450 GYEAARVTGP-GGESVKGS 503
           G EA  V+G   G+ +KGS
Sbjct: 80  GREAYAVSGEVEGQGLKGS 98


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +3

Query: 276 GTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 449
           G+ KWFN   GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 450 GYEAARVTGP-GGESVKGS 503
           G EA  V+G   G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +3

Query: 276 GTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 449
           G+ KWFN   GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 450 GYEAARVTGP-GGESVKGS 503
           G EA  V+G   G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +3

Query: 276 GTVKWFNXKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 449
           G+ KWFN   GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 450 GYEAARVTGP-GGESVKGS 503
           G EA  V+G   G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,154,508
Number of Sequences: 27780
Number of extensions: 251318
Number of successful extensions: 653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4566715120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)