Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E12_e573_10.seq
         (1544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    41   4e-04
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    38   0.004
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    37   0.009
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    33   0.080

>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
 Frame = +1

Query: 130  MEKRLVLELRGRNPSQVKELNLDNCRSTNIVGLSDQYTNLEILSLNNAGLTNLKGFPALP 309
            +E RL       N   ++ L++   +  ++ GLS    +L  L +++  L +L G   L 
Sbjct: 654  VENRLSSLTSFSNLLNLQYLDISYNQLEDLTGLSS-LIHLRELKVDSNHLWSLDGIQHLD 712

Query: 310  KLRKLELSDNRISNGLNFL-SGCKKLTHLNLSGNKIKALEELKPLKEFENLKNLDLFNNE 486
             L KL   +NRI   L+F  S   +L  L L  N+I+ +EE+  L   +NL  L L NN+
Sbjct: 713  GLLKLSACNNRIKE-LSFTNSNLHRLEELLLGNNEIEEIEEISSL---QNLMVLQLDNNK 768

Query: 487  VT 492
            +T
Sbjct: 769  LT 770



 Score = 27.1 bits (57), Expect = 6.9
 Identities = 28/121 (23%), Positives = 52/121 (42%)
 Frame = +1

Query: 178 VKELNLDNCRSTNIVGLSDQYTNLEILSLNNAGLTNLKGFPALPKLRKLELSDNRISNGL 357
           ++EL L+      + G     T  ++ ++ N  L++L  F  L  L+ L++S N++ +  
Sbjct: 628 IEELTLEGNEIAYLTGCP--VTIRDLNAVENR-LSSLTSFSNLLNLQYLDISYNQLED-- 682

Query: 358 NFLSGCKKLTHLNLSGNKIKALEELKPLKEFENLKNLDLFNNEVTIIEDYRSKVFALQPS 537
             L+G   L HL         L  L  ++  + L  L   NN +  +    S +  L+  
Sbjct: 683 --LTGLSSLIHLRELKVDSNHLWSLDGIQHLDGLLKLSACNNRIKELSFTNSNLHRLEEL 740

Query: 538 L 540
           L
Sbjct: 741 L 741


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
 Frame = +1

Query: 169 PSQVKELNLDNCRSTNIVGLS-DQYTNLEILSLNNAGLTNLKGFPALPKLRKLELSDNRI 345
           P  V  + L   R  ++  L  +++ NL+ L L    +  ++  P    L +L+L DN I
Sbjct: 37  PDDVDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVPET--LTELDLYDNLI 94

Query: 346 SNGLNFLSGCKKLTHLNLSGNKIKALEELKPLKEFENL-------------------KNL 468
               N L   K LT+L+LS N IK +  +  LK  ENL                    NL
Sbjct: 95  VRIEN-LDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNL 153

Query: 469 DLFNNEVTIIED 504
           +L  N++ +IE+
Sbjct: 154 ELGGNKIRVIEN 165



 Score = 37.5 bits (83), Expect = 0.005
 Identities = 27/86 (31%), Positives = 40/86 (46%)
 Frame = +1

Query: 232 DQYTNLEILSLNNAGLTNLKGFPALPKLRKLELSDNRISNGLNFLSGCKKLTHLNLSGNK 411
           D   NLE L +    +T  + F  L KL  L +  NRI+   N       L  L +S N 
Sbjct: 167 DTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNG 226

Query: 412 IKALEELKPLKEFENLKNLDLFNNEV 489
           + +   ++ L   ENL+ LD+ NN +
Sbjct: 227 LTSFSGIEVL---ENLEILDVSNNMI 249


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
 Frame = +1

Query: 130 MEKRLVLELRGRNPSQVKELNLDNCRSTNI---VGLSDQYTNLEILSLNNAGLTNLK-GF 297
           MEK  +L     + SQ+  L   +C+  +I   V LS Q  +L  L L+   LT +    
Sbjct: 320 MEKDAILS--SSSWSQLLYLRCSSCKLKSIPKNVFLSLQ--SLVSLDLSGNELTEIPYAL 375

Query: 298 PALPKLRKLELSDNRISNGLNFLSGCKKLTHLNLSGNKIKALEE-----LKPLKEFENLK 462
             LP+L  L L+ N+I+       GC+   H++LS  +I  L       L  L+   +L+
Sbjct: 376 GELPQLCSLNLASNKIT-------GCRTFYHISLSHLQILVLSRNHLTSLSGLENVPSLE 428

Query: 463 NLDLFNNEVTIIEDYRSKV 519
            LD+ +N +T + ++R  V
Sbjct: 429 KLDIRDNSITDVVEFRRLV 447


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 33.5 bits (73), Expect = 0.080
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +1

Query: 247 LEILSL-NNAGLTNLKGFPA--LPKLRKLELSDNRISNGLNF-LSGCKKLTHLNLSGNKI 414
           L+ LSL NN  L +  G+       +  L LS   +++     +    KLT L++S N I
Sbjct: 243 LQTLSLANNLNLYSADGYAVDVFQGINNLNLSSTSLADVAELPVHTLHKLTFLDISENNI 302

Query: 415 KALEELKPLKEFENLKNL 468
           + +  L  L+  ENLK+L
Sbjct: 303 RDIRSLDHLRTLENLKHL 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,993,480
Number of Sequences: 5004
Number of extensions: 63111
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)