Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E11_e565_09.seq
         (1558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)                  36   0.088
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                31   3.3  
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)            30   4.4  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.8  

>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
          Length = 447

 Score = 35.9 bits (79), Expect = 0.088
 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
 Frame = +1

Query: 97  YISQPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPT-GVYQWSGAPGFQQV--- 264
           +  QPP   PP +   P   PP    P  N P     NG+P      ++G P +      
Sbjct: 291 FTGQPPYNAPPFTGQPPYNAPPFNGQPPYNTP---PFNGQPPYYTPPFNGQPLYHTPPFN 347

Query: 265 AQMPVDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTKITNLKGQYVFNGKP 423
            Q P +   +  QP+  + P    P Y + P   Q +       GQ  +N  P
Sbjct: 348 GQPPYNTPPFNGQPLYHTPPFNGQPPYNTPPFNGQPSYNTPPFNGQPPYNTPP 400



 Score = 30.7 bits (66), Expect = 3.3
 Identities = 29/116 (25%), Positives = 38/116 (32%)
 Frame = +1

Query: 76  RGSLGLGYISQPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGF 255
           +   G  +  QPP   P  +   P   PP    P  N P     NG+P         P F
Sbjct: 273 KSDTGPSFSGQPPYNNPLFTGQPPYNAPPFTGQPPYNAP---PFNGQPP-----YNTPPF 324

Query: 256 QQVAQMPVDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTKITNLKGQYVFNGKP 423
               Q P     +  QP+  + P    P Y + P   Q         GQ  +N  P
Sbjct: 325 N--GQPPYYTPPFNGQPLYHTPPFNGQPPYNTPPFNGQPLYHTPPFNGQPPYNTPP 378


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 21/81 (25%), Positives = 32/81 (39%)
 Frame = +1

Query: 97  YISQPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQVAQMP 276
           Y+  P    P   P    G PP++  P I  P+D      P G  Q    PG    +++P
Sbjct: 304 YMPHPRMRPPTRIPPPGMGPPPRIPPPPIRAPVDVYPPRAPQGASQTPPYPG-SHYSRVP 362

Query: 277 VDPFSYGSQPILPSRPNYNVP 339
                Y ++ + P  P   +P
Sbjct: 363 PPDGPY-TRALPPGEPYARMP 382


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 103 SQPPTIGPPMSPMLPQGVPPQVADPFINLPIDF 201
           +QPPT  P ++P  P    P   +P  ++ +DF
Sbjct: 867 TQPPTFAPSIAPTQPPTPKPPTTEPNFDIKVDF 899


>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 412

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
 Frame = +1

Query: 109 PPTIG-PPMSPMLPQ-GVPPQVADPFINLPIDFVSN--GKPTGVYQWSGAPGFQQVAQMP 276
           PP +G PPM    P  G P  +  P +  P+       G+P G+ Q  GAP        P
Sbjct: 122 PPGMGMPPMGMQQPMMGQPMGMQQPMMGQPMAMQQPVMGQPMGMQQPMGAPMGMCCMPPP 181

Query: 277 VDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTKITNLKG 399
           ++P  Y   P  P    Y  P+      P+      T  KG
Sbjct: 182 LNP--YQPPPFPPPHLMYPQPTAPPAAIPRAKAKVQTPRKG 220


>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
          Length = 618

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
 Frame = +1

Query: 130 MSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQVAQMPVDPFSYGS-QP 306
           +S   P G P     P  NL   +  +G P   Y  SG P  +        P  Y S  P
Sbjct: 37  ISRYYPSGNPQSRYYPSGNLQSRYYPSGNPQPRYYPSGNPQSRYYPSGNPQPRYYPSGNP 96

Query: 307 ILPSRPNYNVPS-YQSKPKPQQTNTKITNLKGQYVFNGKPADSVYVLRNTYNSIY-SDAL 480
                P+ N+ S Y     PQ       NL+ +Y  +G      Y   N  +  Y S  L
Sbjct: 97  QSRYYPSGNLQSRYYPSGNPQSRYYPSGNLQSRYYPSGNLQSRYYPSGNLQSRYYPSGNL 156

Query: 481 QN-FYP 495
           Q+ +YP
Sbjct: 157 QSRYYP 162


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 100  ISQPPTIGPPMSPMLPQGVPP 162
            I QPPT  PP  PM P   PP
Sbjct: 952  IMQPPTSIPPSQPMAPPSFPP 972


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,190,584
Number of Sequences: 59808
Number of extensions: 628805
Number of successful extensions: 1748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5082457441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)