Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_E11_e565_09.seq
(1558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 38 0.019
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 33 0.41
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 33 0.41
AF016682-4|AAB66185.1| 263|Caenorhabditis elegans Hypothetical ... 33 0.55
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr... 33 0.72
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p... 33 0.72
Z81130-6|CAB03419.4| 312|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical p... 30 3.9
Z71266-1|CAA95839.1| 945|Caenorhabditis elegans Hypothetical pr... 30 3.9
AF100307-8|AAC68937.2| 250|Caenorhabditis elegans Hypothetical ... 30 5.1
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 30 5.1
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 30 5.1
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 6.7
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 6.7
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 6.7
AF003130-14|AAB54129.1| 892|Caenorhabditis elegans Hypothetical... 29 6.7
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 29 8.9
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 37.9 bits (84), Expect = 0.019
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P + +G PTG + SGAP
Sbjct: 176 PPSGGPP-GPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAP 221
Score = 35.1 bits (77), Expect = 0.14
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P + P +G P G + SGAP
Sbjct: 146 PPSGGPP-GPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAP 191
Score = 34.7 bits (76), Expect = 0.18
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 401 PPSGGPP-GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 446
Score = 34.7 bits (76), Expect = 0.18
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 416 PPSGGPP-GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 461
Score = 34.7 bits (76), Expect = 0.18
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 431 PPSGGPP-GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 476
Score = 34.7 bits (76), Expect = 0.18
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 446 PPSGGPP-GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 491
Score = 34.3 bits (75), Expect = 0.24
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 221 PPSGGPP-GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 266
Score = 34.3 bits (75), Expect = 0.24
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 236 PPSGGPP-GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 281
Score = 34.3 bits (75), Expect = 0.24
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 251 PPSGGPP-GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAP 296
Score = 34.3 bits (75), Expect = 0.24
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 326 PPSGGPP-GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 371
Score = 34.3 bits (75), Expect = 0.24
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 341 PPSGGPP-GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAP 386
Score = 34.3 bits (75), Expect = 0.24
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 386 PPSGGPP-GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 431
Score = 34.3 bits (75), Expect = 0.24
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 461 PPSGGPP-GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 506
Score = 34.3 bits (75), Expect = 0.24
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 476 PPSGGPP-GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 521
Score = 33.9 bits (74), Expect = 0.31
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +1
Query: 103 SQPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
S+ P G P P P G PP P P +G P G + SGAP
Sbjct: 203 SEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 251
Score = 33.9 bits (74), Expect = 0.31
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 281 PPSGGPP-GPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAP 326
Score = 33.9 bits (74), Expect = 0.31
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 356 PPSGGPP-GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAP 401
Score = 33.9 bits (74), Expect = 0.31
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G PP P P +G P G + SGAP
Sbjct: 371 PPSGGPP-GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 416
Score = 32.3 bits (70), Expect = 0.96
Identities = 23/66 (34%), Positives = 28/66 (42%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQVAQMPVDPF 288
PP+ GPP P P G PP P P +G P G + SGA Q + P PF
Sbjct: 266 PPSGGPP-GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGA----QPSGGPPGPF 320
Query: 289 SYGSQP 306
+ P
Sbjct: 321 NPSGAP 326
Score = 31.9 bits (69), Expect = 1.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQW 237
PP+ GPP P P G PP P + LP D + +QW
Sbjct: 506 PPSGGPP-GPFDPSGAPPSGMPP-VPLPTDLPIPSESPSFFQW 546
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 112 PTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
P+ GPP P P G PP P P +G P G + SGAP
Sbjct: 312 PSGGPP-GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 356
Score = 31.1 bits (67), Expect = 2.2
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAP 249
PP+ GPP P P G P P P +G P G + SGAP
Sbjct: 296 PPSGGPP-GPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 341
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 33.5 bits (73), Expect = 0.41
Identities = 32/105 (30%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Frame = +1
Query: 58 AAGNSARGSLGLGYISQPPTIGPPMSPMLPQGVPPQVADPFINLP--IDFVSNGKPTGVY 231
AA + GS G G + PP G P P PQG PQ P G+P G
Sbjct: 289 AAPRTTPGSAGPG--TGPP--GTPQRPQYPQGTNPQPQQAQFTYPPTQQMTPTGQPPGYP 344
Query: 232 QWSGAPGFQQVAQMPVDPFSYGSQPILPSRPNYNVP-SYQSKPKP 363
G P F A F G P Y P + Q +P P
Sbjct: 345 GMPGTPTFSSPAH---QMFRQGQPTAPPGMRQYISPQAGQQQPTP 386
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 33.5 bits (73), Expect = 0.41
Identities = 32/105 (30%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Frame = +1
Query: 58 AAGNSARGSLGLGYISQPPTIGPPMSPMLPQGVPPQVADPFINLP--IDFVSNGKPTGVY 231
AA + GS G G + PP G P P PQG PQ P G+P G
Sbjct: 287 AAPRTTPGSAGPG--TGPP--GTPQRPQYPQGTNPQPQQAQFTYPPTQQMTPTGQPPGYP 342
Query: 232 QWSGAPGFQQVAQMPVDPFSYGSQPILPSRPNYNVP-SYQSKPKP 363
G P F A F G P Y P + Q +P P
Sbjct: 343 GMPGTPTFSSPAH---QMFRQGQPTAPPGMRQYISPQAGQQQPTP 384
>AF016682-4|AAB66185.1| 263|Caenorhabditis elegans Hypothetical
protein T07D3.5 protein.
Length = 263
Score = 33.1 bits (72), Expect = 0.55
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 67 NSARGSLGLGYISQPPTIGPPMSPMLPQGVPPQV 168
N GS Y+ PP +GPP+SP P+ PP V
Sbjct: 161 NLGEGSTAPPYLKFPPVVGPPISPP-PRHFPPPV 193
>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical
protein M01F1.7 protein.
Length = 1034
Score = 32.7 bits (71), Expect = 0.72
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +1
Query: 274 PVDPFSYGSQPILPSR----PNYNVPSYQSKPKPQQTNTKI-TNLKGQYVFNGKPADSVY 438
P+DP +P+L + P YNVP YQ P + K + + ++ K D++
Sbjct: 608 PLDPCGARIEPVLDGQLSCVPPYNVPKYQRYPLGDGKSQKFESTIDATQMWGSKRIDNLL 667
Query: 439 VLRNTYNSIYSDALQN 486
N+ ++ S AL N
Sbjct: 668 YCPNSMVALPSSALPN 683
>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
protein M01F1.7 protein.
Length = 1034
Score = 32.7 bits (71), Expect = 0.72
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +1
Query: 274 PVDPFSYGSQPILPSR----PNYNVPSYQSKPKPQQTNTKI-TNLKGQYVFNGKPADSVY 438
P+DP +P+L + P YNVP YQ P + K + + ++ K D++
Sbjct: 608 PLDPCGARIEPVLDGQLSCVPPYNVPKYQRYPLGDGKSQKFESTIDATQMWGSKRIDNLL 667
Query: 439 VLRNTYNSIYSDALQN 486
N+ ++ S AL N
Sbjct: 668 YCPNSMVALPSSALPN 683
>Z81130-6|CAB03419.4| 312|Caenorhabditis elegans Hypothetical
protein T23G11.7b protein.
Length = 312
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 205 SNGKPTGVYQWSGAPGFQQVAQMPVDPFSYGSQPILPSRPNYNVPSYQSKPK-PQQT 372
S+G Y APGF +P P + P P+R N PSY S P P T
Sbjct: 185 SSGPQEHSYNQPPAPGFGFGGGIPNVPSDHSLPPQPPARNNIPPPSYSSTPNLPSHT 241
>Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical
protein R04D3.12 protein.
Length = 320
Score = 31.1 bits (67), Expect = 2.2
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 721 YVCNCFLNVIKVVTMAKSRFTIISTFFRVIF*LTNFLPYSSVLILTTQV 575
++CNCF ++++ +A S TI TFF + + + L S V I+ T V
Sbjct: 90 WICNCFYQIMQLSVLA-SHLTIYGTFF-LKYRMVTKLQMSQVEIMKTYV 136
>Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical
protein Y57G11C.42 protein.
Length = 661
Score = 30.3 bits (65), Expect = 3.9
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 115 TIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQ 261
T PP P+ PQ PP A P I+ D + + + SGAP +Q
Sbjct: 236 TSPPPAQPLFPQQTPPPPASPLISNSGDVFARSRK----EISGAPDSEQ 280
>Z71266-1|CAA95839.1| 945|Caenorhabditis elegans Hypothetical
protein R06C7.1 protein.
Length = 945
Score = 30.3 bits (65), Expect = 3.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTG 225
PP PPM PM P PP P +P D + TG
Sbjct: 5 PPQPHPPMPPMPPVTAPPGAMTPMPPVPADAQKLHQSTG 43
>AF100307-8|AAC68937.2| 250|Caenorhabditis elegans Hypothetical
protein T12B5.13 protein.
Length = 250
Score = 29.9 bits (64), Expect = 5.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 261 LLETRSSTPLVHTRWLSVR-DKINR*IDKWVGDLRWNSLRQHWRHRRSNSGWLRNV 97
LLE R L H +W ++ D I + D+RWN +SNS + NV
Sbjct: 160 LLENRQIVHLFHLKWFEIQLDSFPTNIATEIRDVRWNCCDIGCEKSKSNSIEIANV 215
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 29.9 bits (64), Expect = 5.1
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Frame = +1
Query: 112 PTIGPPMSPMLPQGVP-------PQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQV-A 267
P GPP PQ P Q DP+ N D+ +P Y S AP Q
Sbjct: 215 PRFGPPPFASAPQTAPRGAYDPYSQPTDPYRN-ATDYRRAAEPEDPYARSRAPSVQDYGV 273
Query: 268 QMPVDPFSYGSQPILPSRPNYNVPS 342
+ DP++ + P+ S P+ PS
Sbjct: 274 RASYDPYTQPAAPV-SSYPSQQQPS 297
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 29.9 bits (64), Expect = 5.1
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Frame = +1
Query: 112 PTIGPPMSPMLPQGVP-------PQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQV-A 267
P GPP PQ P Q DP+ N D+ +P Y S AP Q
Sbjct: 215 PRFGPPPFASAPQTAPRGAYDPYSQPTDPYRN-ATDYRRAAEPEDPYARSRAPSVQDYGV 273
Query: 268 QMPVDPFSYGSQPILPSRPNYNVPS 342
+ DP++ + P+ S P+ PS
Sbjct: 274 RASYDPYTQPAAPV-SSYPSQQQPS 297
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 29.5 bits (63), Expect = 6.7
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNG-KPTGV---YQWSGAPGFQQVAQMP 276
PP +GPP P G+PP P + +P + G P V G P F +P
Sbjct: 84 PPGMGPPPFMPPPIGMPP----PPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVP 139
Query: 277 VDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTKITNLKGQYVFNGKPADSVYVLRNTY 456
P S + PI+P P + + K+T+ F+ P + + N Y
Sbjct: 140 -PPTSSAAAPIVPPPPVQSTAQPPPSGTSEAEKMKMTHGLNPIAFSNAP-PGLKLGMNDY 197
Query: 457 N 459
N
Sbjct: 198 N 198
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 29.5 bits (63), Expect = 6.7
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNG-KPTGV---YQWSGAPGFQQVAQMP 276
PP +GPP P G+PP P + +P + G P V G P F +P
Sbjct: 107 PPGMGPPPFMPPPIGMPP----PPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVP 162
Query: 277 VDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTKITNLKGQYVFNGKPADSVYVLRNTY 456
P S + PI+P P + + K+T+ F+ P + + N Y
Sbjct: 163 -PPTSSAAAPIVPPPPVQSTAQPPPSGTSEAEKMKMTHGLNPIAFSNAP-PGLKLGMNDY 220
Query: 457 N 459
N
Sbjct: 221 N 221
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 29.5 bits (63), Expect = 6.7
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNG-KPTGV---YQWSGAPGFQQVAQMP 276
PP +GPP P G+PP P + +P + G P V G P F +P
Sbjct: 357 PPGMGPPPFMPPPIGMPP----PPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVP 412
Query: 277 VDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTKITNLKGQYVFNGKPADSVYVLRNTY 456
P S + PI+P P + + K+T+ F+ P + + N Y
Sbjct: 413 -PPTSSAAAPIVPPPPVQSTAQPPPSGTSEAEKMKMTHGLNPIAFSNAP-PGLKLGMNDY 470
Query: 457 N 459
N
Sbjct: 471 N 471
>AF003130-14|AAB54129.1| 892|Caenorhabditis elegans Hypothetical
protein F55A12.1 protein.
Length = 892
Score = 29.5 bits (63), Expect = 6.7
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQVADPFINLPID 198
PP PPM PM P PP P +P D
Sbjct: 5 PPQPHPPMPPMPPVTAPPGTMPPMPPVPAD 34
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 88 GLGYISQPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPT 222
G YI PP PP P P PPQ+ + LP+ + +P+
Sbjct: 127 GPQYIEAPPP--PPSPPPPPPPPPPQLQQQQVQLPLQDATTLRPS 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,931,318
Number of Sequences: 27780
Number of extensions: 504582
Number of successful extensions: 1552
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4494062834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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