Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_E11_e565_09.seq
(1558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 37 0.031
At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 36 0.055
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 34 0.22
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 33 0.38
At4g08130.1 68417.m01337 hypothetical protein 33 0.51
At3g18770.1 68416.m02382 expressed protein 33 0.51
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 32 1.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 32 1.2
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 31 1.6
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 31 1.6
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 31 2.1
At1g32610.1 68414.m04024 hydroxyproline-rich glycoprotein family... 31 2.1
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 31 2.7
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 31 2.7
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 31 2.7
At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH) domain... 30 3.6
At1g10620.1 68414.m01204 protein kinase family protein contains ... 30 3.6
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 4.7
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 30 4.7
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 6.3
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 6.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 6.3
At5g43770.1 68418.m05353 proline-rich family protein contains pr... 29 8.3
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s... 29 8.3
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet... 24 8.5
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 37.1 bits (82), Expect = 0.031
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Frame = +1
Query: 94 GYISQPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGV-YQWSGAPGFQQVAQ 270
G++S P ++ P PM P + P LP +N P Y PGFQQ +
Sbjct: 136 GHLSPPMSLRP-QQPMAPVAMGPPPQSTTSGLP---GANAYPPATDYHMPARPGFQQ-SM 190
Query: 271 MPVDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTN 375
PV P G PS P Y P P QT+
Sbjct: 191 PPVTPSYPGVGGSQPSFPGYPSKQVLQAPTPFQTS 225
>At1g53260.1 68414.m06035 hypothetical protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 358
Score = 36.3 bits (80), Expect = 0.055
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Frame = +1
Query: 64 GNSARGSLGLGYISQPPTIG----PPMSPMLPQ--GVPPQVADPFINLPIDFVSNGKPTG 225
G + RG+ GY PP G PP P + +PP + P N+ ++ P
Sbjct: 179 GRNDRGNQDTGYRRPPPNQGMGGAPPPPPHIGNNPNMPPHIQPP--NMNQNYRGPPPPPN 236
Query: 226 V---YQWSGAPGFQQVAQMPVDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNT 378
+ YQ AP Q Q P P + G P PN N SYQ P P +
Sbjct: 237 MNQNYQGPPAPNMNQNYQGP-PPSNMGQNYQGPPPPNMN-QSYQGPPPPNMNQS 288
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 34.3 bits (75), Expect = 0.22
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Frame = +1
Query: 91 LGYISQPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQVAQ 270
+ Y S PP P P P+V F + P ++ N P Y +S +P +
Sbjct: 249 VNYKSPPPPYVYSSPPPPPYSPSPKVE--FKSPPPPYIYNSPPPPSY-YSPSPKIDY--K 303
Query: 271 MPVDPFSYGSQPILPSRPNYNVPS----YQSKPKPQQTNTKITNLKGQYVFNGKPADSVY 438
P P+ Y S P P Y PS Y+S P P N+ L YV+N P Y
Sbjct: 304 SPPPPYVYSSPP----PPTYYSPSPRVDYKSPPPPYVYNS----LPPPYVYNSPPPPPYY 355
Query: 439 VLRNTYN 459
T N
Sbjct: 356 SPSPTVN 362
Score = 32.3 bits (70), Expect = 0.89
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +1
Query: 97 YISQPPTIGPPMSPMLPQGVPPQVADPFI--NLPIDFVSNGKPTGVYQWSGAPGFQQVAQ 270
Y S PP SP + PP P++ +LP +V N P Y +S +P +
Sbjct: 311 YSSPPPPTYYSPSPRVDYKSPPP---PYVYNSLPPPYVYNSPPPPPY-YSPSPTVNY--K 364
Query: 271 MPVDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNT 378
P P+ Y S P P + Y+S P P N+
Sbjct: 365 SPPPPYVYNSPPPPPYYSPFPKVEYKSPPPPYIYNS 400
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 33.5 bits (73), Expect = 0.38
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +1
Query: 106 QPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQVAQMPV 279
QPPT PP SP+ P P V P P+ + PT + AP + PV
Sbjct: 153 QPPTYKPPTSPVKPPTTTPPVKPPTTTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPV 210
>At4g08130.1 68417.m01337 hypothetical protein
Length = 226
Score = 33.1 bits (72), Expect = 0.51
Identities = 26/77 (33%), Positives = 36/77 (46%)
Frame = +1
Query: 223 GVYQWSGAPGFQQVAQMPVDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTKITNLKGQ 402
GVY +G P + +Q PF Y S NY++ SYQ+ P P Q +KI +L Q
Sbjct: 45 GVYG-NGQPNYTHKSQFQ-QPFQYSSS--FSFTRNYDLASYQAPPPPAQ-RSKIESLPEQ 99
Query: 403 YVFNGKPADSVYVLRNT 453
+ K Y+ R T
Sbjct: 100 ILEGQKKILERYIPRWT 116
>At3g18770.1 68416.m02382 expressed protein
Length = 625
Score = 33.1 bits (72), Expect = 0.51
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 217 PTGVYQWSGAPGFQQVAQMPVDPFSYGSQPILP--SRPNYNVPSYQSKP 357
PT + + G+P + + P P SYGS P+LP R +++ Y++ P
Sbjct: 273 PTFITDYVGSPLADPLKRFPSLPLSYGSPPLLPFQRRHSWSFDRYKASP 321
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 31.9 bits (69), Expect = 1.2
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +1
Query: 112 PTIGPPM-SPML--PQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQVAQMPVD 282
PTI PP+ +P + P PP P I P+ KPT VY P V PV
Sbjct: 88 PTIPPPVYTPPVYKPTLSPPVYTKPTIPPPVYTPPVYKPTPVYTKPTIP--PPVYTPPVY 145
Query: 283 PFSYGSQPILPSRPNYNVPSYQSKPKPQQTNT 378
+ S P+ P+Y+ P PKP T T
Sbjct: 146 KPT-PSPPVYKKSPSYSSPPPPYVPKPTYTPT 176
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 31.9 bits (69), Expect = 1.2
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Frame = +1
Query: 115 TIGPPMSPMLPQGVPPQVADPFI-NLPIDFVSNGKPTGVYQWSGAPGFQQVAQMPVDPFS 291
T GP M+P P G PP A PF N P+ S+ + + PG F
Sbjct: 241 TSGPMMAPPPPYGQPPN-AGPFTGNSPL---SSPPAHSIPPPTNFPGVPYGRPPMPGGFP 296
Query: 292 YGSQP-ILPSRPNYNVPSYQSKPKPQQTNTKITN 390
YG+ P LPS P Y P Q+ T +++
Sbjct: 297 YGAPPQQLPSAPGTPGSIYGMGPMQNQSMTSVSS 330
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 31.5 bits (68), Expect = 1.6
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Frame = +1
Query: 103 SQPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQVAQMPVD 282
S PP PP +P PP VA P P V+ P + P
Sbjct: 76 SPPPASPPPATPPPVASPPPPVASPPPATPPP-VATPPPAPLASPPAQVPAPAPTTKPDS 134
Query: 283 PF-SYGSQPILPS--RPNYNVPSYQSKPKPQQTNTKITNL 393
P S S P LPS P + S P P N +++NL
Sbjct: 135 PSPSPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQVSNL 174
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 31.5 bits (68), Expect = 1.6
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Frame = +1
Query: 103 SQPPTIGPPMSPMLPQGVPPQVADPFINLPIDF-VSNGKPTGVYQWSGA--PGFQQVAQM 273
SQ PP P LP VPP P + P + P Y G P F Q+
Sbjct: 16 SQNSLAPPPPPPSLPPPVPP---PPPSHQPYSYPPPPPPPPHAYYQQGPHYPQFNQLQAP 72
Query: 274 PVDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTK 381
P P P++P P + P+ K +Q +
Sbjct: 73 PPPPPPSAPPPLVPDPPRHQGPNDHEKGASKQVGRR 108
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 31.1 bits (67), Expect = 2.1
Identities = 27/82 (32%), Positives = 32/82 (39%)
Frame = +1
Query: 238 SGAPGFQQVAQMPVDPFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTKITNLKGQYVFNG 417
SG GFQ P S+G P + P N QS P P TNT N + + FN
Sbjct: 325 SGPSGFQTNPSTTFKPASFGPGPGFATTPQNNNIFGQSTPTP-ATNTSQNN-QTAFNFNV 382
Query: 418 KPADSVYVLRNTYNSIYSDALQ 483
A NT N+ LQ
Sbjct: 383 PVASFTAPAINTTNTSSGTELQ 404
>At1g32610.1 68414.m04024 hydroxyproline-rich glycoprotein family
protein
Length = 291
Score = 31.1 bits (67), Expect = 2.1
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 127 PMSPMLPQGVPPQVADPFINL-PIDFVSNGKPTGVYQWSGAPGFQQVAQMPVDPFSYGSQ 303
P LPQ +P + P + P+ + +P P + VA+ P+ P +GSQ
Sbjct: 49 PSRESLPQPLPRNLLKPQQKIRPVGQIQINRPCVPPPVMAQPTHEFVARPPMHPLPHGSQ 108
Query: 304 PIL 312
PI+
Sbjct: 109 PII 111
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 100 ISQPPTIGPPMSPMLPQGVPPQVADP 177
+ QPP PP P PQ PPQ+ P
Sbjct: 323 LHQPPYQPPPQQPQYPQQPPPQLQHP 348
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 30.7 bits (66), Expect = 2.7
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Frame = +1
Query: 40 LVXXPRAAGNSARGSLGLGYISQPPTIGPPMSP----MLPQGVPPQVADPFINLPIDFVS 207
++ PR GS+ +G +PP + PM P M P GVP +A P LP
Sbjct: 75 MLARPRPPMMLPPGSMPMGM--RPPVLPRPMMPPQGYMPPPGVPQMMAPPGAPLPPP-PQ 131
Query: 208 NG--KPTGVY----QWSGAPGFQQV-AQMPVDPFSYGSQPILPSRPNYNVPSYQSKPKPQ 366
NG +P G+ Q G PG + Q P +Y P P P + P+ + P
Sbjct: 132 NGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLP--PPPPYHTNPA--APPSGN 187
Query: 367 QTNTKITN 390
N + N
Sbjct: 188 FNNPNLNN 195
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 30.7 bits (66), Expect = 2.7
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Frame = +1
Query: 97 YISQPPTIGPPMSPMLPQGVPPQVADPFINL---PIDFVSNGKPTGVYQWSGAPGFQQVA 267
Y S PP P P + PP V P P + P Y S +P + Q
Sbjct: 546 YSSPPPPSPSPPPPYIYSSPPPVVNCPPTTQSPPPPKYEQTPSPREYYP-SPSPPYYQYT 604
Query: 268 QMPVDPFSYGSQ-PILPSRPNYNVPSYQSKPKP 363
P P Y +Q P P P Y + QS P P
Sbjct: 605 SSPPPPTYYATQSPPPPPPPTYY--AVQSPPPP 635
>At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to
Af10-protein (GI:1724114) [Avena fatua]; similar to
clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]; Af10-protein, Avena fatua, EMBL:U80041
Length = 560
Score = 30.3 bits (65), Expect = 3.6
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Frame = +1
Query: 52 PRAAGNSARGSLGLGYISQPPTIGPPMSPMLPQGVP-PQVADPFINLPIDFVSNGKPTGV 228
P +SA ++ L + S + P +P+ + P + DPF +P+D P G
Sbjct: 353 PSVTVSSAPPTVDL-FASSESVVSPEAKISIPESMATPNIVDPFAAVPMDNFDGSDPFGA 411
Query: 229 YQWSGAPGFQQVAQMPVDPFSYGSQPILPSRPNY--NVPSYQSKPKPQQTNTKI 384
+ A V+ P P +GS S ++ + P + K P Q + I
Sbjct: 412 FTSHSA----SVSTGPQAPSVHGSATNTTSPLSFADSKPQHLQKKDPFQVKSGI 461
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 30.3 bits (65), Expect = 3.6
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +1
Query: 103 SQPPTIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQVAQMPVD 282
S PP+I PP SP PQ PP + P + P+ + KP + S P V Q+P D
Sbjct: 85 SPPPSITPPPSP--PQPQPPPQSTPTGDSPV-VIPFPKPQ-LPPPSLFPPPSLVNQLP-D 139
Query: 283 PFSYGSQPILPSRPNYNVPSYQSKP--KPQQTNT 378
P + + P ++PS S P P Q N+
Sbjct: 140 PRPNDNNILEPINNPISLPSPPSTPFSPPSQENS 173
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.9 bits (64), Expect = 4.7
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Frame = +1
Query: 13 PRXGGRS*XLVXXPRAAGNSARGSLGLGYISQPPTI-GPPMSPMLPQGVPPQVADPFINL 189
P GG P G+ S+ S P T+ PP +P P G PP + P +
Sbjct: 501 PTPGGSPPSSPTTPSPGGSPPSPSISP---SPPITVPSPPSTPTSP-GSPPSPSSPTPSS 556
Query: 190 PIDF--VSNGKPTGVYQWSGAPGFQQVAQMPVDPFSYGSQPILPSRP 324
PI + PT + +PG +P PF+ S P PS P
Sbjct: 557 PIPSPPTPSTPPTPI-----SPGQNSPPIIPSPPFTGPSPPSSPSPP 598
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.9 bits (64), Expect = 4.7
Identities = 28/109 (25%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
Frame = +1
Query: 109 PPTIGPPMSPM--LPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQVAQMPVD 282
PP PP +P +P PP DP + P VS PT P V P
Sbjct: 149 PPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPP-VSPPPPTPT---PSVPSPPDVTPTPPT 204
Query: 283 PFSYGSQPILPSRPNYNVPSYQSKPKPQQTNTKITNLKGQYVFNGKPAD 429
P + P+ P +VPS T + G + P+D
Sbjct: 205 PSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPPSVPTPSGSPPYVPPPSD 253
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 6.3
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Frame = +1
Query: 109 PPTIGPP--MSPMLP-QGVPPQVADPFINLPIDFVSNGKPTGVYQWS-GAPGFQQVAQMP 276
PP I PP +P P QG PP P + + G T W P + A P
Sbjct: 560 PPPIAPPGPPAPQPPTQGYPPSNQPPGAYPSQQYATGGYSTAPVPWGPPVPSYSPYALPP 619
Query: 277 VDPFSY 294
P SY
Sbjct: 620 PPPGSY 625
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 6.3
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Frame = +1
Query: 109 PPTIGPP--MSPMLP-QGVPPQVADPFINLPIDFVSNGKPTGVYQWS-GAPGFQQVAQMP 276
PP I PP +P P QG PP P + + G T W P + A P
Sbjct: 560 PPPIAPPGPPAPQPPTQGYPPSNQPPGAYPSQQYATGGYSTAPVPWGPPVPSYSPYALPP 619
Query: 277 VDPFSY 294
P SY
Sbjct: 620 PPPGSY 625
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.5 bits (63), Expect = 6.3
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Frame = +1
Query: 97 YISQPP----TIGPPMSPMLPQGVPPQVADPFINLPIDFVSNGKPTGVYQWSGAPGFQQV 264
Y+S PP PP +P+ PP +P P S P V +S P
Sbjct: 588 YLSPPPPPTPVSSPPPTPVYSPPPPPPCIEPPPPPPCIEYSPPPPPPVVHYSSPPPPPVY 647
Query: 265 AQMPVDPFSYGSQPILPSRPNYNVP 339
P P Y S P P +Y+ P
Sbjct: 648 YSSPPPPPVYYSSPPPPPPVHYSSP 672
>At5g43770.1 68418.m05353 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 187
Score = 29.1 bits (62), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 103 SQPPTIGPPMSPMLPQGVPPQVADPFINLP 192
S PP +GPP +P VPP + P + P
Sbjct: 113 SDPPPLGPPQTPGPEFPVPPSPSPPMPDTP 142
>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
subunit, putative similar to component of chloroplast
outer membrane translocon Toc64 [Pisum sativum]
GI:7453538; contains Pfam profiles PF01425: Amidase,
PF00515: TPR Domain
Length = 603
Score = 29.1 bits (62), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 64 GNSARGSLGLGYISQPPTIGPPMSPMLPQGVP 159
G + LG G I + G P++P++P VP
Sbjct: 122 GKTIMDELGFGIIGENKHYGTPINPLMPDNVP 153
>At5g27650.1 68418.m03313 PWWP domain-containing protein hypothetical
protein F22F7.12 - Arabidopsis thaliana, EMBL:AC009606
Length = 1072
Score = 23.8 bits (49), Expect(2) = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 109 PPTIGPPMSPMLPQGVPPQ 165
PP+ PP+ P+ PQ PQ
Sbjct: 992 PPSTLPPILPLPPQYTKPQ 1010
Score = 23.4 bits (48), Expect(2) = 8.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 247 PGFQQVAQMPVDPFSYGSQPILPSRPNYNVP 339
P + + Q+P+ P + P+ PSR N+ P
Sbjct: 1004 PQYTKPQQLPIKPVDHVEPPMPPSR-NFRGP 1033
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,393,615
Number of Sequences: 28952
Number of extensions: 461390
Number of successful extensions: 1353
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4183148928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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