Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E09_e549_09.seq
         (1522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1182 + 28233916-28234240,28235279-28235305,28236348-28236448     32   1.0  
08_02_1557 + 27867977-27869134                                         32   1.4  
02_04_0386 - 22529291-22529418,22529860-22529941                       31   2.4  
11_02_0037 - 7613632-7613727,7614452-7615507                           30   5.5  
03_02_0689 - 10423661-10424343,10425580-10425628                       29   7.3  

>06_03_1182 + 28233916-28234240,28235279-28235305,28236348-28236448
          Length = 150

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 880 INVSDGVRLVRRRCSARKXSGSTTGXSPVRASAAYPLARSQAWCKSLAASVPG 722
           IN+SD +RL   RC   + +    G SP  +  A P     A  ++++  +PG
Sbjct: 86  INISDALRL-STRCGISQTTSMCPGNSPTNSPPASPSGGKNAGHRTMSVGLPG 137


>08_02_1557 + 27867977-27869134
          Length = 385

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 796 VRASAAYPLARSQAWCKSLAASVPGXRVD 710
           V AS+AYP    Q+ CKS AAS P   +D
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSPAVTID 246


>02_04_0386 - 22529291-22529418,22529860-22529941
          Length = 69

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -3

Query: 125 KCLPSNVKMCCPVDASCRIXCXPGGXPLVARSGRXRG 15
           KC P N K CC  D  C   C     P     G+  G
Sbjct: 30  KCGPCNCKGCCDYDGKCMSYCSGHSGPCCKWKGKCHG 66


>11_02_0037 - 7613632-7613727,7614452-7615507
          Length = 383

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 482 PYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTPE-HSHHQMHAALPP 625
           P+   +   G +      +G AY+ AR+ P    P  H HH  H  + P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271


>03_02_0689 - 10423661-10424343,10425580-10425628
          Length = 243

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 723 PGTDAAKDLHXACDLARGYAALALTGLXPVVLPDXL 830
           PG  A +D H A  L RG+ A  L G  P V  D L
Sbjct: 108 PGRPARRDRHLARLLRRGWRAACLPGEQPQVADDVL 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,932,099
Number of Sequences: 37544
Number of extensions: 560951
Number of successful extensions: 1463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4884487468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)