Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E09_e549_09.seq
         (1522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   1e-06
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   39   1e-06
SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.001
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.002
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.15 
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)                     31   1.8  

>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 83   HQRDSTFSRSTANT*PSPXQC-RYVLIHDYVDRNFTVLLQL--QNGQPKALVLEDKSGTI 253
            HQ+   F   +        +C +YVL  D  +  F VL +   QN     ++++     I
Sbjct: 1308 HQKLELFDNQSIKLNQDKPKCVQYVLAQDRNNEVFRVLAKRDQQNRLHLQVIVKITKQVI 1367

Query: 254  IELKDNGQVTLNGAAHGFPVIEKDVFA-FKQTNGRIGLGSKYGL----MAFCTSKLEVCY 418
            I++  +  VT+NG A    V E    A   +   RI +   Y L    + +  ++++V  
Sbjct: 1368 IKVSPDLTVTVNGKACEDKVCEVSGAARIVRREQRIKVQINYKLSSLHVVYMPNRIQV-- 1425

Query: 419  FEVNGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 556
               N F   +LRGL GD N E YD+F+ P G+   +  +F  A+ L
Sbjct: 1426 -HANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 1470


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 39.1 bits (87), Expect(2) = 1e-06
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +2

Query: 455  GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSLAR--SCPKVQTPEHSHHQMHAALPPA 628
            GLLG  NNE +D+   PNGK   S  EF N++ +     C   +  +       +     
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEVTNDTKCQIQRYIKPKSKCPTSRYSSR 1870

Query: 629  CEQVF-GGISPLRPISLLLDITPFRQAC 709
            C ++F    SPL P   + +  PF  AC
Sbjct: 1871 CRELFKDEHSPLAPFFNITNPRPFMLAC 1898



 Score = 32.3 bits (70), Expect(2) = 1e-06
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
 Frame = +2

Query: 140  QCRYVLIHDYVDRNFTVLLQ-------LQNGQPKALVLEDKSGTIIELKDNGQVTLNGAA 298
            +C YVL  D  D  FT++ Q        ++G  K +    +  +++++   G   L+G  
Sbjct: 1669 ECTYVLARDVRDNKFTIMSQEDAMILITEDGNVK-IHSSGRVESMVKIDAEGNKILDGYN 1727

Query: 299  HGFPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLGKLRG 457
               PV  K++   ++    + L    G+   C  +   C F  + ++ G+L G
Sbjct: 1728 SELPVQTKNMTVTRE-GPFVVLRHDIGIEILCDMEHNACTFNFDKWFHGRLAG 1779


>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +2

Query: 428 NGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 556
           N F   +LRGL GD N E YD+F+ P G+   +  +F  A+ L
Sbjct: 18  NPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 437 YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 556
           Y G   GL G+ N  P DDF + NG+   S+ EFG ++SL
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGRYARSDREFGKSWSL 215


>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 455 GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 556
           GLLG  NNE +D+   PNGK   S  EF N++ +
Sbjct: 63  GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 96


>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
          Length = 237

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 404 LEVCYFEVNGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNA 547
           L V +     FY G   GL GD +N P +DF  P G+  T   +F  +
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTGERFTDAVQFAES 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,214,826
Number of Sequences: 59808
Number of extensions: 616567
Number of successful extensions: 1528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4941604117
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)