Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E09_e549_09.seq
         (1522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    32   0.93 
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ...    31   2.1  

>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
           protein F54F3.1 protein.
          Length = 1584

 Score = 32.3 bits (70), Expect = 0.93
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 173 QRSRVSTRSGTVPGKVKCLPSNVKMCCPVDASCRIXCXPG 54
           Q   +ST S   PG+ +C   N+K C  VD S R  C PG
Sbjct: 653 QSESISTDSVCAPGRHQCTLPNMK-CRVVDPSYRCECEPG 691


>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
           protein R09A1.1 protein.
          Length = 1121

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 131 SPXQCRYVLIHDYVDRNFTVLLQL--QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHG 304
           SP QCR     DY  + +  +++    +GQP     E+K   +I+    G++  N   HG
Sbjct: 671 SPRQCRDF---DYNQQGYHAIMRAIEDSGQPVLWADENKHSAVIQ----GELQFNQNQHG 723

Query: 305 FPVIEKDVFAFKQTNG 352
             VIE+ +   K T G
Sbjct: 724 IEVIEQFLQNIKSTIG 739


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,994,415
Number of Sequences: 27780
Number of extensions: 437152
Number of successful extensions: 1076
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4369516058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)