Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E09_e549_09.seq
         (1522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.43 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   9.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 27.1 bits (57), Expect = 0.43
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 362 LGSKYGLMAFCTSKLEVCYFEVNGFYLGKLRG-LLGDGNNEPYDDFRLPNGKICTSESEF 538
           +   +G     T+K +  YF+  G   GK RG ++ + NN+ +   +  +     +ESEF
Sbjct: 1   MADDWGKTVSYTNKKDESYFDEGGRSYGKGRGFIIQNNNNDDWSVGKKNSNSGTINESEF 60

Query: 539 GN 544
            +
Sbjct: 61  ND 62


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 684 ISHHSDKRASTRXPGTDAAKDLHXACDLARGYAALALTGLXPVVLP 821
           +S  SD  +S+R   +  +  +     +A    A ALTG  P +LP
Sbjct: 443 LSPQSDSSSSSRSAESPMSVQVD---PMAASVVAAALTGTYPTLLP 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,324
Number of Sequences: 438
Number of extensions: 5433
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53233125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)