Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E08_e541_10.seq
         (1554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0772 + 27970494-27972875                                         31   3.3  
01_06_1570 + 38312319-38314259                                         29   7.5  

>04_04_0772 + 27970494-27972875
          Length = 793

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 207 NYKITIKTSSGSSPCSVRVPPISWRSERRIFV 302
           NY +T+KT+SG +P S     + W S ++  V
Sbjct: 739 NYTVTVKTASGKAPASTIEGQLKWVSGKKYVV 770


>01_06_1570 + 38312319-38314259
          Length = 646

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 258 RVPPISWRSERRIFVDVASGAPY 326
           R PP+SW   R + +DVA G  Y
Sbjct: 415 RPPPLSWAQRRGVVLDVARGLEY 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,994,898
Number of Sequences: 37544
Number of extensions: 386365
Number of successful extensions: 771
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5012110656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)