Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E08_e541_10.seq
         (1554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    30   4.7  
At1g17540.1 68414.m02157 protein kinase-related similar to serin...    29   6.3  

>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -1

Query: 837 YVLEIIXFXLFPNVMYYNNKSVTFVXTLFF*IKFCLNIAFFNETDSSQKIKVLS*SGKMT 658
           Y+  I  F L P      N  V FV   FF  +FC+++       S +  +V+  +GK  
Sbjct: 50  YLHSIYTFSLNPCSETNTNMKVVFVIFFFFLFQFCISVDTIMRRQSLRDGEVILSAGKRF 109

Query: 657 LNGTF 643
             G F
Sbjct: 110 AFGFF 114


>At1g17540.1 68414.m02157 protein kinase-related similar to
           serine/threonine protein kinase Fen [Lycopersicon
           esculentum] GI:1809259
          Length = 733

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 249 CSVRVPPISWRSERRIFVDVASG 317
           C    PP+SWR+  RI  ++A+G
Sbjct: 505 CKDNTPPLSWRARFRIAAEIATG 527


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,776,830
Number of Sequences: 28952
Number of extensions: 311388
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4173510336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)