Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E07_e533_09.seq
         (1573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0019 + 27697918-27698609,27701107-27701372,27701778-277019...    30   5.8  
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095     29   7.6  

>11_08_0019 +
           27697918-27698609,27701107-27701372,27701778-27701948,
           27702187-27703166,27703723-27703804,27704148-27704170
          Length = 737

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -2

Query: 855 QRDXAGKASTLRKASGPPLCPWXILSSTRSCSAWTSKLETNIPPCHIKFNCXSSCINK*K 676
           + D  G A+   K   P +  W I S+  SC   + K+   + P     +  S C+N   
Sbjct: 236 REDLVGNANYFDKKGIPLVLDWAIRSNGSSCPHESGKMANPVVPYGACVSSHSYCVN--- 292

Query: 675 FVQFNNNHG 649
               NN HG
Sbjct: 293 --VTNNGHG 299


>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
          Length = 597

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 1250 PPXGXRPRLXXXXPXGGLGXPAXSTXXPRPXGXXLXXNRXA 1372
            PP   +P+       GG G  A +T  P P G  +   R A
Sbjct: 108  PPPAQQPQQNQGVGFGGTGAGAATTVSPAPRGTTMARERAA 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,726,537
Number of Sequences: 37544
Number of extensions: 663147
Number of successful extensions: 1267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5081723304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)