Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E07_e533_09.seq
         (1573 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043206-1|AAH43206.2|  417|Homo sapiens JPH2 protein protein.         33   2.2  
AL035447-2|CAI19380.1|  696|Homo sapiens JPH2 protein.                 33   2.2  
AL034419-2|CAI42199.1|  696|Homo sapiens JPH2 protein.                 33   2.2  

>BC043206-1|AAH43206.2|  417|Homo sapiens JPH2 protein protein.
          Length = 417

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 1082 PQXGGGAWGXXDQEXFXTKRHQRRXWRMXEGXPTPGNHPPKXXRPR 945
            P  G GA G         + H+R   R   G P+P   PP+  RPR
Sbjct: 174  PDRGAGAAGLPQPPRESPQLHERETPRPEGGSPSPAGTPPQPKRPR 219


>AL035447-2|CAI19380.1|  696|Homo sapiens JPH2 protein.
          Length = 696

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 1082 PQXGGGAWGXXDQEXFXTKRHQRRXWRMXEGXPTPGNHPPKXXRPR 945
            P  G GA G         + H+R   R   G P+P   PP+  RPR
Sbjct: 453  PDRGAGAAGLPQPPRESPQLHERETPRPEGGSPSPAGTPPQPKRPR 498


>AL034419-2|CAI42199.1|  696|Homo sapiens JPH2 protein.
          Length = 696

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 1082 PQXGGGAWGXXDQEXFXTKRHQRRXWRMXEGXPTPGNHPPKXXRPR 945
            P  G GA G         + H+R   R   G P+P   PP+  RPR
Sbjct: 453  PDRGAGAAGLPQPPRESPQLHERETPRPEGGSPSPAGTPPQPKRPR 498


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,291,879
Number of Sequences: 237096
Number of extensions: 3782812
Number of successful extensions: 13070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13061
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23411404302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)