Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E06_e525_10.seq
         (1562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    31   1.9  
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612...    29   10.0 

>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 138 LFCRRXFKYXCFLHRLQAXXPRPNLXKXKGPDLKPXXEPCGPXXYM 275
           LFCRR   + C LH        P+  +  G +L     PCG   Y+
Sbjct: 92  LFCRRCLVFDCRLHGCSQNLVFPSEKQPYGHELDENKRPCGDQCYL 137


>07_03_1554 +
           27659995-27660093,27661084-27661120,27661204-27661280,
           27662272-27662342,27662512-27662590,27662726-27662828,
           27662963-27663082,27663180-27663257,27663416-27663471,
           27663588-27663657,27664179-27664266,27664503-27664800,
           27664943-27665158,27665521-27665841,27666054-27666103,
           27666493-27666553,27666633-27666716,27666926-27667039,
           27667134-27667300,27667559-27667628,27668328-27668507,
           27668619-27668807
          Length = 875

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 292 RKPSRSMXQXGPXGSXXG---FRSGPFXLXKLGLGWXACKR 179
           R+  +   Q G   S  G   F+SGP  +   G+GW + K+
Sbjct: 14  RQQQQQQQQRGGAASASGNAVFKSGPLFISSKGIGWKSWKK 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,590,972
Number of Sequences: 37544
Number of extensions: 102537
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5046916980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)