Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E06_e525_10.seq
         (1562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.067

>SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 36.3 bits (80), Expect = 0.067
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 55  PPECTPNIDGPXAESVS 105
           PPECTPNID P A+SVS
Sbjct: 207 PPECTPNIDSPEAQSVS 223



 Score = 31.5 bits (68), Expect = 1.9
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 138 LFCRRXFKYXCFLH 179
           LFCRR +KY CFLH
Sbjct: 234 LFCRRCYKYDCFLH 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,590,664
Number of Sequences: 59808
Number of extensions: 110263
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5105932995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)