Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E05_e517_09.seq
         (1617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   168   2e-42
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   168   2e-42
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    28   4.2  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  168 bits (409), Expect = 2e-42
 Identities = 77/146 (52%), Positives = 96/146 (65%)
 Frame = +1

Query: 112 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 291
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 292 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 471
           TCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG                Y 
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 472 GATEVTGDEYNVEPVDNGPGAFMMLL 549
           G TE  G+    E +++GP  F + L
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFL 146



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 21/31 (67%), Positives = 25/31 (80%)
 Frame = +3

Query: 582 ARVFGAMKGAVDGGLXVPHSIKRFXGYDAES 674
           +RVFGAMKGA DGGL +PHS  RF G+D E+
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIET 187



 Score = 24.2 bits (50), Expect(2) = 7.6
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 545 YLDVGLARTTTGRSRIW 595
           +LDVGL RT+TG SR++
Sbjct: 145 FLDVGLKRTSTG-SRVF 160



 Score = 21.0 bits (42), Expect(2) = 7.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 701 RXHIFGLHVAXYM 739
           R +I+G HVA YM
Sbjct: 196 RKYIYGGHVAEYM 208


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  168 bits (409), Expect = 2e-42
 Identities = 77/146 (52%), Positives = 96/146 (65%)
 Frame = +1

Query: 112 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 291
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 292 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 471
           TCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG                Y 
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 472 GATEVTGDEYNVEPVDNGPGAFMMLL 549
           G TE  G+    E +++GP  F + L
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFL 146



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 21/31 (67%), Positives = 25/31 (80%)
 Frame = +3

Query: 582 ARVFGAMKGAVDGGLXVPHSIKRFXGYDAES 674
           +RVFGAMKGA DGGL +PHS  RF G+D E+
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIET 187



 Score = 24.2 bits (50), Expect(2) = 7.6
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 545 YLDVGLARTTTGRSRIW 595
           +LDVGL RT+TG SR++
Sbjct: 145 FLDVGLKRTSTG-SRVF 160



 Score = 21.0 bits (42), Expect(2) = 7.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 701 RXHIFGLHVAXYM 739
           R +I+G HVA YM
Sbjct: 196 RKYIYGGHVAEYM 208


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -2

Query: 566 VLSLHPSNIMNAPGPLSTGSTLYSSPVTSVAPV*RLSKPSLCNNLLASNRPVQ 408
           +LS+H     N      TGS   SS V S      +SKPS  N L    +P+Q
Sbjct: 321 LLSIHLMQSKNQGHVSMTGSDKLSSHVQSETENAPVSKPSKPNTLTEDEKPLQ 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,941,162
Number of Sequences: 5004
Number of extensions: 68902
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 915764388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)