Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E05_e517_09.seq
         (1617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   175   6e-44
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   172   6e-43

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  175 bits (427), Expect = 6e-44
 Identities = 82/135 (60%), Positives = 95/135 (70%)
 Frame = +1

Query: 115 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 294
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 295 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 474
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG             D  Y G
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119

Query: 475 ATEVTGDEYNVEPVD 519
             E TG++Y VEP D
Sbjct: 120 NVEATGEDYYVEPAD 134



 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = +3

Query: 585 RVFGAMKGAVDGGLXVPHSIKRFXGY 662
           RVFGA+KGA+DGGL +PHS KRF G+
Sbjct: 155 RVFGALKGALDGGLDIPHSDKRFAGF 180



 Score = 24.2 bits (50), Expect(2) = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 698 HRXHIFGLHVAXYM 739
           HR +I+G HVA YM
Sbjct: 192 HRKYIYGGHVADYM 205



 Score = 23.8 bits (49), Expect(2) = 7.1
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +2

Query: 548 LDVGLARTTTG 580
           LDVGL RTTTG
Sbjct: 143 LDVGLIRTTTG 153


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  172 bits (419), Expect = 6e-43
 Identities = 81/135 (60%), Positives = 94/135 (69%)
 Frame = +1

Query: 115 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 294
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 295 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 474
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG             D  Y G
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119

Query: 475 ATEVTGDEYNVEPVD 519
             E TG++Y VEP D
Sbjct: 120 NIEATGEDYYVEPAD 134



 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = +3

Query: 585 RVFGAMKGAVDGGLXVPHSIKRFXGY 662
           RVFGA+KGA+DGGL +PHS KRF G+
Sbjct: 155 RVFGALKGALDGGLDIPHSDKRFAGF 180



 Score = 24.2 bits (50), Expect(2) = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 698 HRXHIFGLHVAXYM 739
           HR +I+G HVA YM
Sbjct: 192 HRKYIYGGHVADYM 205



 Score = 23.8 bits (49), Expect(2) = 7.1
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +2

Query: 548 LDVGLARTTTG 580
           LDVGL RTTTG
Sbjct: 143 LDVGLIRTTTG 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,913,817
Number of Sequences: 37544
Number of extensions: 470003
Number of successful extensions: 1007
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5255754924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)