Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E05_e517_09.seq
         (1617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         114   2e-25
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             106   6e-23

>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  114 bits (275), Expect = 2e-25
 Identities = 50/88 (56%), Positives = 60/88 (68%)
 Frame = +1

Query: 301 VAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGAT 480
           +AY+++EGD I+CAAY+HELPRYG+KVGLTNYAAAYCTG               +YTG  
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 481 EVTGDEYNVEPVDNGPGAFMMLLGCRLS 564
           EV GDEYNVE +D  PGAF   L   L+
Sbjct: 61  EVNGDEYNVESIDGSPGAFRCFLDVGLA 88



 Score = 39.9 bits (89), Expect = 0.006
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +3

Query: 582 ARVFGAMKGAVDGGLXVPH 638
           ARVFGA+KGAVDGGL +PH
Sbjct: 94  ARVFGALKGAVDGGLEIPH 112


>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  106 bits (254), Expect = 6e-23
 Identities = 66/167 (39%), Positives = 86/167 (51%), Gaps = 37/167 (22%)
 Frame = +1

Query: 175 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 264
           RR +GKTDYYARKR                        ++ Q++NK   P      KYR 
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76

Query: 265 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXX 423
             R   NK          ++AY++++GD ++ +AY+HELP +G+KVGLTNYAAAYCTG  
Sbjct: 77  NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136

Query: 424 XXXXXXXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFMMLLGCRLS 564
                        +YTG  +V GDEYNVE VD  PGAF   L   L+
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLA 183



 Score = 59.3 bits (137), Expect = 9e-09
 Identities = 25/31 (80%), Positives = 29/31 (93%)
 Frame = +3

Query: 582 ARVFGAMKGAVDGGLXVPHSIKRFXGYDAES 674
           ARVFGA+KGAVDGGL +PHS+KRF GYD+ES
Sbjct: 189 ARVFGALKGAVDGGLEIPHSMKRFPGYDSES 219



 Score = 32.7 bits (71), Expect = 0.85
 Identities = 23/66 (34%), Positives = 29/66 (43%)
 Frame = +2

Query: 542 CYLDVGLARTTTGRSRIWCHEGRR*WRFKXSTFYQEVXWI*C*I*XNLMQXXHRXHIFGL 721
           C+LDVGLART+TG       +G      +     +           +     HR HIFG 
Sbjct: 176 CFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPGYDSES-KDFSAEVHRNHIFGK 234

Query: 722 HVAXYM 739
           HVA YM
Sbjct: 235 HVAEYM 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,511,448
Number of Sequences: 59808
Number of extensions: 549656
Number of successful extensions: 1154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5278441988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)