Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E05_e517_09.seq
         (1617 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...   246   1e-66
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    25   8.1  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score =  246 bits (603), Expect = 1e-66
 Identities = 112/151 (74%), Positives = 124/151 (82%)
 Frame = +1

Query: 112 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 291
           MGFVKVVKNKQYFKRYQV+F+RRREGKTDYYARKRL+ QDKNKYNTPK+RLIVRLSN+D+
Sbjct: 1   MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDI 60

Query: 292 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 471
           TCQ+AY RIEGD IVCAAYSHELPRYG+KVGLTNYAAAYCTG             D+LY 
Sbjct: 61  TCQIAYRRIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYA 120

Query: 472 GATEVTGDEYNVEPVDNGPGAFMMLLGCRLS 564
           G T+VTG+EY VEPVD GP AF   L   L+
Sbjct: 121 GCTDVTGEEYLVEPVDEGPAAFRCYLDVGLA 151



 Score = 57.6 bits (133), Expect = 9e-10
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +3

Query: 582 ARVFGAMKGAVDGGLXVPHSIKRFXGYDAES 674
           +RVFGAMKGAVDGGL +PHS+KRF GY AE+
Sbjct: 157 SRVFGAMKGAVDGGLNIPHSVKRFPGYSAEN 187



 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 26/66 (39%), Positives = 29/66 (43%)
 Frame = +2

Query: 542 CYLDVGLARTTTGRSRIWCHEGRR*WRFKXSTFYQEVXWI*C*I*XNLMQXXHRXHIFGL 721
           CYLDVGLARTTTG       +G            +           +     HR HIFGL
Sbjct: 144 CYLDVGLARTTTGSRVFGAMKGAVDGGLNIPHSVKRFPGYSA-ENKSFNAEMHRDHIFGL 202

Query: 722 HVAXYM 739
           HVA YM
Sbjct: 203 HVANYM 208


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 472  GATEVTGDEYNVEPVDNGPG 531
            G T+ +GD+  ++  DNG G
Sbjct: 2011 GGTDASGDDLEIDACDNGCG 2030


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,445
Number of Sequences: 2352
Number of extensions: 18011
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 563,979
effective HSP length: 68
effective length of database: 404,043
effective search space used: 189900210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)