Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E05_e517_09.seq
         (1617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   208   8e-54
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    29   9.3  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    29   9.3  
AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical ...    29   9.3  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  208 bits (508), Expect = 8e-54
 Identities = 99/153 (64%), Positives = 115/153 (75%), Gaps = 1/153 (0%)
 Frame = +1

Query: 112 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 291
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 292 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 471
             Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY TG             DS Y 
Sbjct: 61  VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYK 120

Query: 472 GATEVTGDEYNVEPV-DNGPGAFMMLLGCRLST 567
           G  E+TG++YNVE   D  P   ++ +G   +T
Sbjct: 121 GHEELTGEDYNVEEEGDRAPFKAVLDIGLARTT 153



 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 582 ARVFGAMKGAVDGGLXVPHSIKRFXGYDAES 674
           +++F  MKG  DGG+ VPHS  RF G+D ES
Sbjct: 156 SKIFAVMKGVADGGINVPHSESRFFGFDQES 186



 Score = 25.4 bits (53), Expect(2) = 4.9
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 LDVGLARTTTG 580
           LD+GLARTTTG
Sbjct: 145 LDIGLARTTTG 155



 Score = 23.0 bits (47), Expect(2) = 4.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 698 HRXHIFGLHVAXYM 739
           HR  I G HVA YM
Sbjct: 194 HRDRILGKHVADYM 207


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 320 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 424
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 320 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 424
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical
           protein Y67H2A.2a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 91  ISGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 204
           I  IF K+G V+  K +Q  +R+Q+KF   RE +T Y+
Sbjct: 405 IYSIFYKLGKVEE-KERQIIERFQIKF-HEREDRTRYF 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,306,157
Number of Sequences: 27780
Number of extensions: 405421
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4701640794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)