Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E05_e517_09.seq
         (1617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.80 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.80 
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    24   3.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   7.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   7.4  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 133 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 258
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 133 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 258
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 316 CVSMQLDR*HLYWIAVQSVGTLECCICFYPGQRGVCEHSSQFFP 185
           C S+ L   +L+W+ V   GT      ++P   G  EH S+FFP
Sbjct: 29  CTSLNLS--NLFWLFV---GT------YFPSLIGANEHYSKFFP 61


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 193 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAY 309
           TD   RK ++ +++ K ++    ++V + N+D    +AY
Sbjct: 288 TDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAY 326


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 627 LNLHQRRPSWHQIRE--RPVVVRAKP 556
           LN+H R+PS H++    R + +R  P
Sbjct: 320 LNVHYRKPSTHKMAPWVRKIFIRRLP 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,139
Number of Sequences: 438
Number of extensions: 4920
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 57061125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)