Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E05_e517_09.seq
         (1617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   174   2e-43
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   173   3e-43

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  174 bits (423), Expect = 2e-43
 Identities = 78/137 (56%), Positives = 97/137 (70%)
 Frame = +1

Query: 112 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 291
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 292 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 471
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAYCTG             D  Y 
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 472 GATEVTGDEYNVEPVDN 522
           G  E TG++++VEP D+
Sbjct: 121 GNVEATGEDFSVEPTDS 137



 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +3

Query: 585 RVFGAMKGAVDGGLXVPHSIKRFXGYDAES 674
           RVFGA+KGA+DGGL +PHS KRF G+  E+
Sbjct: 157 RVFGALKGALDGGLDIPHSDKRFAGFHKEN 186


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  173 bits (421), Expect = 3e-43
 Identities = 78/137 (56%), Positives = 97/137 (70%)
 Frame = +1

Query: 112 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 291
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 292 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 471
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAYCTG             D  Y 
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 472 GATEVTGDEYNVEPVDN 522
           G  E TG++++VEP D+
Sbjct: 121 GNVEATGEDFSVEPTDS 137



 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +3

Query: 585 RVFGAMKGAVDGGLXVPHSIKRFXGYDAES 674
           RVFGA+KGA+DGGL +PHS KRF G+  E+
Sbjct: 157 RVFGALKGALDGGLDIPHSDKRFAGFHKEN 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,937,805
Number of Sequences: 28952
Number of extensions: 363505
Number of successful extensions: 839
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 85
effective length of database: 9,609,640
effective search space used: 4353166920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)