Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E04_e509_10.seq
         (1534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    33   0.14 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.9  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    28   3.9  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    28   3.9  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   6.9  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   9.1  

>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +2

Query: 335 NEEDWTLLSKKAEAAGADALELNLSCPHGMGESG-MGLACGQDPVLVKGISQWVRKAIKI 511
           N+ +  L + K  A   DA+++NL CP G+ + G  G    ++  L++ I   +   + I
Sbjct: 84  NDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKLHTELSI 143

Query: 512 PFFVKLT--PNITDIVSIAVAAYEGGAS 589
           P   K+   P+    +  A    + GAS
Sbjct: 144 PVTAKIRIFPDPQKTLDYAKMILKAGAS 171


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 23/83 (27%), Positives = 31/83 (37%)
 Frame = -2

Query: 807 SADSAESIPPIPRIGKPGSLLPIAETARSPIGRVALPDSPPYVVCFSRPTAGHGVPSALI 628
           ++ SA  IPP     +P   +P       P      P  PP     S P      P A +
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPP------PIPPPSNGTVSSPPNSPPRPIAPV 278

Query: 627 DINPDTVFIADTPLAPPSYAATA 559
            +NP     +  PL PPS   +A
Sbjct: 279 SMNPAINSTSKPPLPPPSSRVSA 301


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
 Frame = +2

Query: 170 VRGVTSGENYGPGQGSFLNI-ELISEKCEAYWCQSVTELKK-DFPNKVIIASIMC----- 328
           ++G+T G++  PG  + +NI   IS+   +   Q+       +F  KV  A I C     
Sbjct: 258 IKGITYGDSNRPGINNLINIFAAISDSTPSDIAQANASCSNAEFKEKVSSAIIRCLQPIS 317

Query: 329 -SYNE--EDWTLLSKKAEAAGADALELNLSCPH 418
            S+NE  ++  LL   A+    +A+    SC H
Sbjct: 318 TSFNEWRQNRELLRDIAKKGAEEAVAEASSCMH 350


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 579 PSYAATAMLTMSVIFGVSFTKNGILIALRTHCD 481
           PSYA+T  L+        +  +G LI+   HCD
Sbjct: 76  PSYASTPSLSPMTSSHFPYASDGTLISATNHCD 108


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 877 NCEVLILYSTAYLYDRCTAHYK-LQCGFCRINPTDSQDW-ETRESVTDSG 734
           +CE+  +  T   Y+   A    LQ     +NPTD  DW E +E +   G
Sbjct: 542 SCEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLWDWAELKEKIAKHG 591


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
 Frame = -1

Query: 652 PWSTISSDRHQSRYGVYS*YSTCSTFV----C-----SYSDANNVCNI 536
           P+S+I S   ++ Y  YS + TCS F+    C     SY  A N+CN+
Sbjct: 491 PFSSIHSTGSRALYMPYS-FETCSAFLHYIYCGTLNGSYCTAKNLCNL 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,095,703
Number of Sequences: 5004
Number of extensions: 100110
Number of successful extensions: 277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 860263516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)