Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E04_e509_10.seq
         (1534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)          279   3e-75
SB_47306| Best HMM Match : I-set (HMM E-Value=0)                       31   3.2  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.2  
SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.7  
SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8)                29   7.5  
SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.5  
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.5  

>SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)
          Length = 700

 Score =  279 bits (685), Expect = 3e-75
 Identities = 128/162 (79%), Positives = 142/162 (87%)
 Frame = +2

Query: 92   EQGWGFAVTKTFSLDKDMVTNVSPRIVRGVTSGENYGPGQGSFLNIELISEKCEAYWCQS 271
            E GWGFA+TKTFSLDKD+VTNVSPRIVRG TSG  YGPGQGSFLNIELISEK  AYWC+S
Sbjct: 538  EAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGHLYGPGQGSFLNIELISEKTSAYWCRS 597

Query: 272  VTELKKDFPNKVIIASIMCSYNEEDWTLLSKKAEAAGADALELNLSCPHGMGESGMGLAC 451
            +TELKKDFP+K++IASIMC Y+++DWT L+K AEAAGADALELNLSCPHGMGE GMGLAC
Sbjct: 598  ITELKKDFPDKILIASIMCGYSKQDWTTLAKMAEAAGADALELNLSCPHGMGERGMGLAC 657

Query: 452  GQDPVLVKGISQWVRKAIKIPFFVKLTPNITDIVSIAVAAYE 577
            GQD  LV+ I +WVR AI IPFF KLTPN+TDIV IA AA E
Sbjct: 658  GQDAELVRNICRWVRAAITIPFFAKLTPNVTDIVVIARAAKE 699


>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1260

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -2

Query: 969 LKPGGXLSRPS-VRPKNEXTTGAFNPVM*SSTTVKS*FCTALHICTTGAPHIINCSADSA 793
           LK G  LSR S VRPK E            S T++     AL+ C   A + +   + SA
Sbjct: 462 LKEGKPLSRDSHVRPKYEAEIATLTF---KSATLED---EALYTCV--ATNALGSVSSSA 513

Query: 792 E-SIPPIPRIGKPGSLLPIAETA 727
           E  +   P I  P S  P+AETA
Sbjct: 514 ELQVDEKPEISAPESTTPVAETA 536


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -2

Query: 774 PRIGKPGSLLPIAETARSPIGRVALPDSPPYVVCFSRPTAGHGVPSALI-DINPDTVF-- 604
           PR+  PG          +PI RV LP++    V +SR T  HG PS  I  + P      
Sbjct: 619 PRLPPPGPPYQRVPPPGAPIQRVPLPETHHQRVPYSRAT-HHGEPSPRIPTVTPRVPISP 677

Query: 603 IADTPLAPPSYAATA 559
           +A++P   P    TA
Sbjct: 678 LAESPQKSPLEPVTA 692


>SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +2

Query: 266 QSVTEL-KKDFPNKVIIASIMCSYNEEDWTLLSKKAEAAGADA 391
           Q+VT++ +K+ P+KV + ++ C ++++  T  SKK  A G DA
Sbjct: 19  QAVTQMVRKEAPSKVRLVAVCCGFSKDYHT--SKKRFAFGEDA 59


>SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8)
          Length = 988

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 6    WXXPAVAAALXTSGIPRAAGNSARGEGDSSKAGDSLSPR 122
            W  PA +  + TSG P     ++RG+G ++    S  PR
Sbjct: 933  WMFPASSPLMGTSGSPVTNDGTSRGQGGNTPTLHSTDPR 971


>SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 486 CDMPFTKTGSCPQARPIPDSPMPCG 412
           C  PF+ TG CP    +P   +PCG
Sbjct: 303 CPPPFS-TGFCPDITDVPSDQVPCG 326


>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 702  LPDSPPYVVCFSRPTAGHGVPSALIDINPDTV 607
            +P +P   +  SRPT   G PS L D NPD++
Sbjct: 971  IPQAPQQAIESSRPTQNTGTPSRL-DQNPDSL 1001


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,402,017
Number of Sequences: 59808
Number of extensions: 846446
Number of successful extensions: 2428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2416
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4988555225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)