Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_E04_e509_10.seq
(1534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr... 385 e-107
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.41
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.41
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.41
Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical pr... 32 0.94
AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr prote... 32 0.94
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 31 2.9
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 31 2.9
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 31 2.9
>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical protein
C25F6.3 protein.
Length = 1059
Score = 385 bits (947), Expect = e-107
Identities = 178/272 (65%), Positives = 210/272 (77%)
Frame = +2
Query: 92 EQGWGFAVTKTFSLDKDMVTNVSPRIVRGVTSGENYGPGQGSFLNIELISEKCEAYWCQS 271
EQGWGF +TKT+ LDKD+VTNVSPRIVRG TSG YGP QGSF+NIELISEK YW Q
Sbjct: 579 EQGWGFILTKTYGLDKDLVTNVSPRIVRGSTSGPLYGPNQGSFMNIELISEKSCEYWLQC 638
Query: 272 VTELKKDFPNKVIIASIMCSYNEEDWTLLSKKAEAAGADALELNLSCPHGMGESGMGLAC 451
+ ELK+D P K++IASIMC YN+ DW L+ K+E AGAD LELNLSCPHGMGE GMGLAC
Sbjct: 639 IRELKRDHPTKIVIASIMCVYNKADWIELATKSEEAGADILELNLSCPHGMGEKGMGLAC 698
Query: 452 GQDPVLVKGISQWVRKAIKIPFFVKLTPNITDIVSIAVAAYEGGASGVSAINTVSGLMSI 631
GQ P +VK I +WVR +KIPFF K+TPNITD+ IA AA +GGASGV+A NTVS LM +
Sbjct: 699 GQSPEIVKEICRWVRACVKIPFFPKMTPNITDVREIARAARDGGASGVTATNTVSSLMHM 758
Query: 632 RADGTPWPAVGREKHTTYGGLSGNATRPMGLRAVSAIGNRXXXXXXXXXXXXDSAESALQ 811
+ADG WPA+G K TTYGG+SG+A RP+ ++AVS+I N +SAE+ L
Sbjct: 759 KADGNAWPAIGSTKRTTYGGMSGSAIRPIAMKAVSSIANELDGFPIMATGGIESAETGLG 818
Query: 812 FIMCGAPVVQICSAVQNQDFTVVDDYITGLKA 907
F+M GA V+Q+CSAVQNQDFTVVDDY TGLKA
Sbjct: 819 FLMAGASVLQVCSAVQNQDFTVVDDYCTGLKA 850
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.41
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 1396 GPPPXXXXXGNAXPXXKPPPPGXFXXXPP 1482
GPPP G P PPPPG F PP
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.41
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 1396 GPPPXXXXXGNAXPXXKPPPPGXFXXXPP 1482
GPPP G P PPPPG F PP
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.41
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 1396 GPPPXXXXXGNAXPXXKPPPPGXFXXXPP 1482
GPPP G P PPPPG F PP
Sbjct: 340 GPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
>Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical
protein C41C4.4 protein.
Length = 967
Score = 32.3 bits (70), Expect = 0.94
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 328 THYRSYNYFIRKVFLQFRYTLTPICFAFLRDEFYIEERSLSRSVIFA 188
TH YF + QFRY +C A L D Y+E++ + ++V A
Sbjct: 568 THPHVIRYFCMESDSQFRYLALELCIASLND--YVEQKEVQQNVTIA 612
>AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr protein
kinase protein.
Length = 967
Score = 32.3 bits (70), Expect = 0.94
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 328 THYRSYNYFIRKVFLQFRYTLTPICFAFLRDEFYIEERSLSRSVIFA 188
TH YF + QFRY +C A L D Y+E++ + ++V A
Sbjct: 568 THPHVIRYFCMESDSQFRYLALELCIASLND--YVEQKEVQQNVTIA 612
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 258 YASHFSEMSSILRKDPCPGP*FSPDVTPRTIRGDTLVTISLSRENVLVTANPQPCSNPLR 79
Y ++ + +L PGP F P T T+ T VT+ + V T N P +NP
Sbjct: 448 YEGGANKPTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPP-ANPTT 506
Query: 78 LVPNXL 61
P +
Sbjct: 507 ATPTTV 512
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 258 YASHFSEMSSILRKDPCPGP*FSPDVTPRTIRGDTLVTISLSRENVLVTANPQPCSNPLR 79
Y ++ + +L PGP F P T T+ T VT+ + V T N P +NP
Sbjct: 448 YEGGANKPTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPP-ANPTT 506
Query: 78 LVPNXL 61
P +
Sbjct: 507 ATPTTV 512
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 258 YASHFSEMSSILRKDPCPGP*FSPDVTPRTIRGDTLVTISLSRENVLVTANPQPCSNPLR 79
Y ++ + +L PGP F P T T+ T VT+ + V T N P +NP
Sbjct: 448 YEGGANKPTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPP-ANPTT 506
Query: 78 LVPNXL 61
P +
Sbjct: 507 ATPTTV 512
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,337,104
Number of Sequences: 27780
Number of extensions: 631757
Number of successful extensions: 1678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4411031650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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