Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_E04_e509_10.seq
         (1534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   1.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   5.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   9.2  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 206 GQGSFLNIELISEKCEAYWCQSVTELKKDFPNKVI 310
           G G  L I+ ++  C A+W   V+ +   F NK+I
Sbjct: 378 GGGYLLGIQCLTVVCLAFWSFIVSTILLWFINKII 412


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 467 KPDLVHRLGPFQIPPCRAGTTDLVLKHPHQLLPLSWTVVSNPPH 336
           +P+L +R G           T LV +   +LL L W V+ +PP+
Sbjct: 231 RPELTNRKGVVFHHDNARPHTSLVTRQ--KLLELGWDVLPHPPY 272


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 753 SLLPIAETARSPIGRVALPDSPPYVVCFSRPTAGHGVPSALIDINPDTV 607
           SL    E    PIG   L +  P+ + F        + ++L+ I PD V
Sbjct: 191 SLAMTREEKHLPIGASVLFEIFPFCIVFGSDMIVRSIGNSLMVILPDLV 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,151
Number of Sequences: 438
Number of extensions: 8780
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53711625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)